fix: Fix `get_ranges` for empty channels in Image #1136

Czaki · 2024-07-09T18:20:27Z

fix PARTSEG-TZ

Summary by CodeRabbit

New Features
- Enhanced class initialization with list comprehension for better range adjustments.
- Introduced new methods for internal adjustments and mask fitting.
Improvements
- Updated method signatures to use modern type hinting for improved code clarity and maintainability.

fix PARTSEG-TZ

sourcery-ai · 2024-07-09T18:20:34Z

🧙 Sourcery has finished reviewing your pull request!

Tips

Trigger a new Sourcery review by commenting @sourcery-ai review on the pull request.
Continue your discussion with Sourcery by replying directly to review comments.
You can change your review settings at any time by accessing your dashboard:
- Enable or disable the Sourcery-generated pull request summary or reviewer's guide;
- Change the review language;
You can always contact us if you have any questions or feedback.

coderabbitai · 2024-07-09T18:20:37Z

Walkthrough

The changes to the PartSegImage/image.py file focus on modernizing the type hint syntax with the | symbol for union types and refining methods' signatures. The initialization of a key class has been enhanced by integrating a list comprehension to adjust ranges more efficiently. New helper methods have been introduced to further streamline class functionality.

Changes

File	Summary
package/PartSegImage/image.py	Updated type hints using `

Poem

In the land of code where rabbits dwell,
Improved the types and served them well.
With shorthand symbols, clear and bright,
We modernized our code's fine might.
Each class and function, new and fey,
Hops through tasks a smoother way. 🐇✨

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

Share

Tips

Chat

There are 3 ways to chat with CodeRabbit:

Review comments: Directly reply to a review comment made by CodeRabbit. Example:
- I pushed a fix in commit <commit_id>.
- Generate unit testing code for this file.
- Open a follow-up GitHub issue for this discussion.
Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
- @coderabbitai generate unit testing code for this file.
- @coderabbitai modularize this function.
PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
- @coderabbitai generate interesting stats about this repository and render them as a table.
- @coderabbitai show all the console.log statements in this repository.
- @coderabbitai read src/utils.ts and generate unit testing code.
- @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
- @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (invoked as PR comments)

@coderabbitai pause to pause the reviews on a PR.
@coderabbitai resume to resume the paused reviews.
@coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
@coderabbitai full review to do a full review from scratch and review all the files again.
@coderabbitai summary to regenerate the summary of the PR.
@coderabbitai resolve resolve all the CodeRabbit review comments.
@coderabbitai configuration to show the current CodeRabbit configuration for the repository.
@coderabbitai help to get help.

Additionally, you can add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.

CodeRabbit Configration File (`.coderabbit.yaml`)

You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
Please see the configuration documentation for more information.
If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

Visit our Documentation for detailed information on how to use CodeRabbit.
Join our Discord Community to get help, request features, and share feedback.
Follow us on X/Twitter for updates and announcements.

sourcery-ai

We've reviewed this pull request using the Sourcery rules engine. If you would also like our AI-powered code review then let us know.

coderabbitai

Actionable comments posted: 0

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 29befda and 6628283.

Files selected for processing (1)

package/PartSegImage/image.py (1 hunks)

Additional comments not posted (1)

package/PartSegImage/image.py (1)

153-155: Good safeguard against identical min and max values.

The list comprehension ensures that ranges with identical min and max values are adjusted to have a valid span.

codecov · 2024-07-09T18:31:40Z

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 92.97%. Comparing base (cc9d57b) to head (6389177).
Report is 65 commits behind head on develop.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #1136      +/-   ##
===========================================
+ Coverage    92.95%   92.97%   +0.01%     
===========================================
  Files          207      207              
  Lines        32626    32632       +6     
===========================================
+ Hits         30328    30339      +11     
+ Misses        2298     2293       -5

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

coderabbitai

Actionable comments posted: 0

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 6628283 and 5b95990.

Files selected for processing (1)

package/PartSegImage/image.py (24 hunks)

Additional comments not posted (11)

package/PartSegImage/image.py (11)

37-38: LGTM! Updated type annotations improve readability.

The new type annotations for components and max_val are correct and enhance code readability.

106-111: LGTM! Updated type annotations improve readability.

The new type annotations for mask, axes_order, and shift are correct and enhance code readability.

157-162: LGTM! New static method with correct type annotations.

The _adjust_ranges method is well-defined and the type annotations are appropriate.

164-168: LGTM! New method integrates well with existing logic.

The _fit_mask method is well-defined and integrates properly with _prepare_mask and fit_mask_to_image.

171-174: LGTM! Updated type annotations improve readability.

The new type annotations for the return type are correct and enhance code readability.

186-187: LGTM! Updated type annotations improve readability.

The new type annotations for the return type are correct and enhance code readability.

198-199: LGTM! Updated type annotations improve readability.

The new type annotations for data and the return type are correct and enhance code readability.

222-223: LGTM! Updated type annotations improve readability.

The new type annotations for the parameters and return type are correct and enhance code readability.

365-366: LGTM! Updated type annotations improve readability.

The new type annotations for the parameters are correct and enhance code readability.

386-387: LGTM! Updated type annotations improve readability.

The new type annotations for the return type are correct and enhance code readability.

783-784: LGTM! Updated type annotations improve readability.

The new type annotations for the return type are correct and enhance code readability.

coderabbitai

Actionable comments posted: 0

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 5b95990 and 79fd10b.

Files selected for processing (1)

package/PartSegImage/image.py (24 hunks)

Files skipped from review as they are similar to previous changes (1)

package/PartSegImage/image.py

sonarcloud · 2024-07-09T22:44:40Z

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

fix ranges

6628283

fix PARTSEG-TZ

Czaki added this to the 0.15.3 milestone Jul 9, 2024

sourcery-ai bot reviewed Jul 9, 2024

View reviewed changes

coderabbitai bot reviewed Jul 9, 2024

View reviewed changes

Czaki added 2 commits July 9, 2024 20:40

simplify function by extract new code

f7f17b7

more simplify

5b95990

coderabbitai bot reviewed Jul 9, 2024

View reviewed changes

Czaki added 2 commits July 9, 2024 23:36

Merge branch 'develop' into fix_image_range

453433e

simpify

79fd10b

coderabbitai bot reviewed Jul 9, 2024

View reviewed changes

Merge branch 'develop' into fix_image_range

6389177

Czaki merged commit d5f7ef8 into develop Jul 10, 2024
53 checks passed

Czaki deleted the fix_image_range branch July 10, 2024 06:22

This was referenced Sep 20, 2024

refactor: merge all channel-specific attributes of the Image class #1191

Merged

feat: Read channel colors from *.czi metadata #1198

Merged

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

fix: Fix `get_ranges` for empty channels in Image #1136

fix: Fix `get_ranges` for empty channels in Image #1136

Czaki commented Jul 9, 2024 •

edited by coderabbitai bot

Loading

sourcery-ai bot commented Jul 9, 2024 •

edited

Loading

coderabbitai bot commented Jul 9, 2024 •

edited

Loading

Chat

CodeRabbit Commands (invoked as PR comments)

CodeRabbit Configration File (`.coderabbit.yaml`)

Documentation and Community

sourcery-ai bot left a comment

coderabbitai bot left a comment

codecov bot commented Jul 9, 2024 •

edited

Loading

coderabbitai bot left a comment

coderabbitai bot left a comment

sonarcloud bot commented Jul 9, 2024

fix: Fix get_ranges for empty channels in Image #1136

fix: Fix get_ranges for empty channels in Image #1136

Conversation

Czaki commented Jul 9, 2024 • edited by coderabbitai bot Loading

Summary by CodeRabbit

sourcery-ai bot commented Jul 9, 2024 • edited Loading

coderabbitai bot commented Jul 9, 2024 • edited Loading

Walkthrough

Changes

Poem

Chat

CodeRabbit Commands (invoked as PR comments)

CodeRabbit Configration File (.coderabbit.yaml)

Documentation and Community

sourcery-ai bot left a comment

Choose a reason for hiding this comment

coderabbitai bot left a comment

Choose a reason for hiding this comment

codecov bot commented Jul 9, 2024 • edited Loading

Codecov Report

coderabbitai bot left a comment

Choose a reason for hiding this comment

coderabbitai bot left a comment

Choose a reason for hiding this comment

sonarcloud bot commented Jul 9, 2024

Quality Gate passed

fix: Fix `get_ranges` for empty channels in Image #1136

fix: Fix `get_ranges` for empty channels in Image #1136

Czaki commented Jul 9, 2024 •

edited by coderabbitai bot

Loading

sourcery-ai bot commented Jul 9, 2024 •

edited

Loading

coderabbitai bot commented Jul 9, 2024 •

edited

Loading

CodeRabbit Configration File (`.coderabbit.yaml`)

codecov bot commented Jul 9, 2024 •

edited

Loading