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_config.yml
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_config.yml
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# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing these this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.
---
title: "Galaxy Training!"
email: galaxytrainingnetwork@gmail.com
description: A collection of tutorials generated and maintained by Galaxy Community Members across the world
url: "https://training.galaxyproject.org"
baseurl: "/training-material"
github_repository: "https://github.com/galaxyproject/training-material"
github_repository_branch: "main"
gitter_url: "https://gitter.im/Galaxy-Training-Network/Lobby"
logo: "assets/images/GTN.png"
small_logo: "assets/images/GTN-60px.png"
help_url: https://help.galaxyproject.org/
other_languages: #"fr, ja, es, pt, ar"
en: English
fr: Français
ja: 日本語
es: Español
pt: Português
ar: العربية
words_to_not_translate:
- bed
- dna
- expression
- downstream
- galaxy
- mapping
- reads
- rna
- single cell
- single-cell
- toolshed
- upstream
- wiggle
- workflow
# Where things are
source: .
destination: ./_site
plugins_dir: _plugins
layouts_dir: _layouts
data_dir: metadata
includes_dir: .
# Conversion
markdown: kramdown
highlighter: rouge
kramdown:
input: GFM
syntax_highlighter: rouge
auto_ids: true
toc_levels: 1..2
# Figure plugin parameters
figurify:
skip_empty: true # or false if you want to generate all figures, even those without any alt or title
skip_layouts:
- introduction_slides
- tutorial_slides
- base_slides
skip_titles:
- Example of an image with a caption
# Scholar
scholar:
source: topics/
bibliography: "**/*.bib"
sort_by: "year,month"
bibliography_template: bibtemplate
style: _layouts/g3.csl
# Icon tag config
icon-tag:
announcement: fas fa-bullhorn
code-in: far fa-keyboard
code-out: fas fa-laptop-code
cofest: fas fa-users
comment: far fa-comment-dots
congratulations: far fa-thumbs-up
curriculum: fas fa-graduation-cap
details: fas fa-info-circle
docker_image: fab fa-docker
email: far fa-envelope
exchange: fas fa-exchange-alt
event: far fa-calendar
feedback: far fa-comments
galaxy-barchart: fas fa-chart-bar
galaxy-bug: fas fa-bug
galaxy-chart-select-data: fas fa-database
galaxy-clear: fas fa-times-circle
galaxy-columns: fas fa-columns
galaxy-cross: fas fa-times
galaxy-dropdown: fas fa-caret-down
galaxy-eye: far fa-eye
galaxy-gear: fas fa-cog
galaxy-history: fas fa-columns
galaxy-info: fas fa-info-circle
galaxy-library: far fa-folder
galaxy-pencil: fas fa-pencil-alt
galaxy-refresh: fas fa-sync-alt
galaxy-rulebuilder-history: fas fa-history
galaxy-save: far fa-save
galaxy-scratchbook: fas fa-th
galaxy-selector: far fa-check-square
galaxy-star: far fa-star
galaxy-tags: fas fa-tags
galaxy-upload: fas fa-upload
galaxy-wf-connection: fas fa-arrows-alt-h
galaxy-wf-new: fas fa-plus
galaxy-wf-report-download: fas fa-print
galaxy_instance: fas fa-external-link-alt
github: fab fa-github
gitter: fab fa-gitter
gtn-theme: fas fa-palette
hall-of-fame: fas fa-users
hands_on: fas fa-pencil-alt
help: far fa-question-circle
history-annotate: fas fa-comment
history-share: fas fa-toggle-on
instances: fas fa-globe
interactive_tour: fas fa-magic
keypoints: fas fa-key
language: fas fa-language
last_modification: far fa-calendar
level: fas fa-graduation-cap
linkedin: fab fa-linkedin
new-history: fas fa-plus
objectives: fas fa-bullseye
orcid: fab fa-orcid
param-check: far fa-check-square
param-collection: far fa-folder
param-file: far fa-file
param-files: far fa-copy
param-repeat: far fa-plus-square
param-select: fas fa-filter
param-text: fas fa-pencil-alt
question: far fa-question-circle
references: far fa-bookmark
requirements: fas fa-check-circle
search: fas fa fa-search
slides: fab fa-slideshare
solution: far fa-eye
sticky-note: fas fa-sticky-note
time: fas fa-hourglass-half
tip: far fa-lightbulb
tool: fas fa-wrench
topic: far fa-folder
trophy: fas fa-trophy
tutorial: fas fa-laptop
twitter: fab fa-twitter
warning: fas fa-exclamation-triangle
wf-input: fas fa-chevron-circle-right
workflow-runtime-toggle: far fa-caret-square-up
workflow: fas fa-share-alt
workflow-run: fas fa-play
video: fas fa-video
zenodo_link: far fa-copy
# To exclude in _site
exclude:
- shared/font-awesome/src/
- Gemfile
- Gemfile.lock
- package.json
- package-lock.json
- CONTRIBUTING.md
- CONTRIBUTORS.yaml
- CODEOWNERS
- CODE_OF_CONDUCT.md
- LICENSE.md
- README.md
- Makefile
- miniconda.sh
- "**/README.md"
- "**/*.yaml"
- "**/*.yml"
- "**/*.sh"
- bin/
- metadata/
- templates/
- vendor/
- node_modules/
- .jekyll-cache/
- snippets
- plantuml.jar
- "**/plantuml.jar"
- Procfile
- app.json
# These are provided by an S3 proxy in production
- videos/topics/
include:
- .nojekyll
# Plugins
plugins:
- jekyll-feed
- jekyll-scholar
- jekyll-redirect-from
- jekyll-last-modified-at
- jekyll-sitemap
# Sitemap Configuration
defaults:
-
scope:
path: "topics/*/images/**"
values:
sitemap: false