From 710f51a69b613651e6c9b2b01931ec0f8ad240a0 Mon Sep 17 00:00:00 2001 From: Joshua Shapiro Date: Fri, 24 Jan 2020 17:05:46 -0500 Subject: [PATCH] Fix filename in snakemake --- analyses/copy_number_consensus_call/Snakefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/analyses/copy_number_consensus_call/Snakefile b/analyses/copy_number_consensus_call/Snakefile index 0c896cbd84..8cb72c7c68 100644 --- a/analyses/copy_number_consensus_call/Snakefile +++ b/analyses/copy_number_consensus_call/Snakefile @@ -317,7 +317,7 @@ rule make_segfile: script= os.path.join(config["scripts"], "bed_to_segfile.R"), consensus = "results/cnv_consensus.tsv", neutral = "results/cnv_neutral.bed", - uncalled = "results/cnv_consensus.tsv" + uncalled = "results/uncalled_samples.tsv" output: "results/pbta-cnv-consensus.seg" shell: