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Incorporate CellAssign predictions into annotated SCE object #394

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allyhawkins opened this issue Jul 28, 2023 · 1 comment
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Incorporate CellAssign predictions into annotated SCE object #394

allyhawkins opened this issue Jul 28, 2023 · 1 comment
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CellAssign produces a predictions matrix as the output. We will need to take the predictions, get the cell type assignments, and add those to the processed SCE object that also has SingleR annotations.

We should use the get_celltype_assignments from sc-data-integration as a reference when putting this together.
@allyhawkins allyhawkins self-assigned this Jul 28, 2023
@allyhawkins allyhawkins mentioned this issue Aug 1, 2023
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@allyhawkins allyhawkins mentioned this issue Aug 10, 2023
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Closed by #402

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