diff --git a/.gitignore b/.gitignore index f46bf1c..9771d8b 100644 --- a/.gitignore +++ b/.gitignore @@ -170,3 +170,4 @@ cython_debug/ # debugging output outputs/ +.ragatouille/ diff --git a/bots/docs_qa.py b/bots/docs_qa.py index 31d67b6..91fa9e1 100644 --- a/bots/docs_qa.py +++ b/bots/docs_qa.py @@ -7,7 +7,7 @@ import openai import utils.slack_utils as slack_utils from bots.structured_log import bot_log, BotLogEntry -from docs_qa.rag_manual_stuff import rag_with_typesense +from docs_qa.rag_manual_colbert_rerank import rag_with_typesense from channel_msg_categorize.run_chain import ( run_chain_async as run_channel_msg_categorize, ) diff --git a/docs_qa/main.py b/docs_qa/main.py index cb59132..a1ad1c9 100644 --- a/docs_qa/main.py +++ b/docs_qa/main.py @@ -2,7 +2,7 @@ import pprint import openai -from docs_qa.rag_manual_stuff import rag_with_typesense +from docs_qa.rag_manual_colbert_rerank import rag_with_typesense from channel_msg_categorize.run_chain import ( run_chain_async as run_channel_msg_categorize, ) @@ -25,22 +25,22 @@ async def main(text): print("Reading Altinn Studio docs...") - rag_with_typesense_error = None + rag_error = None try: rag_response = await rag_with_typesense(text) except openai.APIConnectionError as e: - rag_with_typesense_error = f"Azure OpenAI error: {e}" + rag_error = f"Azure OpenAI error: {e}" except openai.RateLimitError as e: - rag_with_typesense_error = f"Azure OpenAI service is busy right now, let's try again" + rag_error = f"Azure OpenAI service is busy right now, let's try again" except openai.APIStatusError as e: - rag_with_typesense_error = f"Azure OpenAI API error: {e}" + rag_error = f"Azure OpenAI API error: {e}" except Exception as ex: - rag_with_typesense_error = f"Error: {ex}" + rag_error = f"Error: {ex}" - if rag_with_typesense_error: - print(rag_with_typesense_error) + if rag_error: + print(rag_error) return diff --git a/docs_qa/rag_manual_colbert_rerank.py b/docs_qa/rag_manual_colbert_rerank.py new file mode 100644 index 0000000..f0fddcd --- /dev/null +++ b/docs_qa/rag_manual_colbert_rerank.py @@ -0,0 +1,261 @@ +import box +import timeit +import yaml +import pprint + +from langchain.pydantic_v1 import BaseModel, Field +from langchain.prompts import ChatPromptTemplate +from langchain.chains.openai_functions import ( + create_structured_output_chain +) +from ragatouille import RAGPretrainedModel +from docs_qa.llm import build_llm +from docs_qa.prompts import qa_template +from docs_qa.extract_search_terms import run_query_async +from docs_qa.translate_answer import translate_to_language +import docs_qa.typesense_search as search +from typing import Sequence +from .config import config + +pp = pprint.PrettyPrinter(indent=2) + +cfg = config() + + +# Import config vars +with open('docs_qa/config/config.yml', 'r', encoding='utf8') as ymlfile: + cfg = box.Box(yaml.safe_load(ymlfile)) + +RAG = RAGPretrainedModel.from_pretrained("colbert-ir/colbertv2.0") + + + +class RagContextRefs(BaseModel): + # relevant_content: str = Field(..., description="Three or four sentences from the most relevant parts of the context document") + source: str = Field(..., description="The metadata.source property") + +class RagPromptReply(BaseModel): + """Relevant context data""" + helpful_answer: str = Field(..., description="The helpful answer") + i_dont_know: bool = Field(..., description="True when unable to answer based on the given context.") + relevant_contexts: Sequence[RagContextRefs] = Field(..., description="List of context documents that were relevant when answering the question.") + + + +async def rag_with_typesense(user_input): + + durations = { + 'total': 0, + 'generate_searches': 0, + 'execute_searches': 0, + 'phrase_similarity_search': 0, + 'colbert_rerank': 0, + 'rag_query': 0, + 'translation': 0, + } + total_start = start = timeit.default_timer() + extract_search_queries = await run_query_async(user_input) + durations['generate_searches'] = round(timeit.default_timer() - start, 1) + + # print(f'Query language code: \'{extract_search_queries.userInputLanguageCode}\', name: \'{extract_search_queries.userInputLanguageName}\'') + # print(f'User query, translated to English: {extract_search_queries.questionTranslatedToEnglish}') + + start = timeit.default_timer() + search_phrase_hits = await search.lookup_search_phrases_similar(extract_search_queries) + durations['phrase_similarity_search'] = round(timeit.default_timer() - start, 1) + + print(f'Search phrase hits found: {len(search_phrase_hits)}') + # pp.pprint(search_phrase_hits) + + start = timeit.default_timer() + search_response = await search.typesense_retrieve_all_by_url(search_phrase_hits) + durations['execute_searches'] = round(timeit.default_timer() - start, 1) + + search_hits = [ + { + 'id': document['document']['id'], + 'url': document['document']['url_without_anchor'], + 'lvl0': document['document']['hierarchy.lvl0'], + 'content_markdown': document['document'].get('content_markdown', ''), + } + for result in search_response['results'] + for hit in result['grouped_hits'] + for document in hit['hits'] + ] + + # print(f'All source document urls:') + # pp.pprint(search_hits) + + start = timeit.default_timer() + + all_urls = [] + all_docs = [] + loaded_docs = [] + loaded_urls = [] + loaded_search_hits = [] + doc_index = 0 + docs_length = 0 + + # make list of all markdown content + while doc_index < len(search_hits): + search_hit = search_hits[doc_index] + doc_index += 1 + unique_url = search_hit['url'] + + if unique_url in all_urls: + continue + + doc_md = search_hit['content_markdown'] + if len(doc_md) == 0: + continue + + loaded_doc = { + 'page_content': doc_md, + 'metadata': { + 'source': unique_url, + } + } + all_docs.append(loaded_doc) + all_urls.append(unique_url) + + + # rerank results using ColBERT + start = timeit.default_timer() + content_original_rank = [ + document['content_markdown'] + for document in search_hits + ] + reranked = RAG.rerank(query=user_input, documents=content_original_rank, k=10) + durations['colbert_rerank'] = round(timeit.default_timer() - start, 1) + + # print(f'ColBERT re-ranking results:') + # pp.pprint(reranked) + + # re-order search-hits based on new ranking + search_hits_reranked = [] + for r in reranked: + h = search_hits[r['result_index']] + search_hits_reranked.append(h) + + + # need to preserve order in documents list + # should only append doc if context is not too big + doc_index = 0 + + while doc_index < len(search_hits_reranked): + search_hit = search_hits_reranked[doc_index] + doc_index += 1 + unique_url = search_hit['url'] + + if unique_url in loaded_urls: + continue + + doc_md = search_hit['content_markdown'] + doc_trimmed = doc_md[:cfg.MAX_SOURCE_LENGTH] + if (docs_length + len(doc_trimmed)) > cfg.MAX_CONTEXT_LENGTH: + doc_trimmed = doc_trimmed[:cfg.MAX_CONTEXT_LENGTH - docs_length - 20] + + if len(doc_trimmed) == 0: + break + + loaded_doc = { + 'page_content': doc_trimmed, + 'metadata': { + 'source': unique_url, + } + } + print(f'loaded markdown doc, length= {len(doc_trimmed)}, url= {unique_url}') + # pp.pprint(loaded_doc) + + docs_length += len(doc_trimmed) + loaded_docs.append(loaded_doc) + loaded_urls.append(unique_url) + loaded_search_hits.append(search_hit) + + if docs_length >= cfg.MAX_CONTEXT_LENGTH: + print(f'MAX_CONTEXT_LENGTH: {cfg.MAX_CONTEXT_LENGTH} exceeded, loaded {len(loaded_docs)} docs.') + break + + if len(loaded_docs) >= cfg.MAX_CONTEXT_DOC_COUNT: + break + + not_loaded_urls = [] + for hit in search_hits: + url = hit['url'] + if url not in loaded_urls and url not in not_loaded_urls: + not_loaded_urls.append(url) + + + # print(f'stuffed source document urls:') + # pp.pprint(loaded_urls) + + print(f'Starting RAG structured output chain, llm: {cfg.MODEL_TYPE}') + + start = timeit.default_timer() + llm = build_llm(streaming=False) + prompt = ChatPromptTemplate.from_messages( + [('system', 'You are a helpful assistant.'), + ('human', qa_template(extract_search_queries.userInputLanguageName))] + ) + + + runnable = create_structured_output_chain(RagPromptReply, llm, prompt) + result = runnable.invoke({ + "context": yaml.dump(loaded_docs), + "question": extract_search_queries.questionTranslatedToEnglish + }) + + + durations['rag_query'] = round(timeit.default_timer() - start, 1) + + # print(f"Time to run RAG structured output chain: {chain_end - chain_start} seconds") + + # print(f'runnable result:') + # pp.pprint(result) + + if result['function'] is not None: + relevant_sources = [{ + 'url': context.source, + 'title': next((hit['lvl0'] for hit in search_hits if hit['url'] == context.source), None), + } + for context in result['function'].relevant_contexts] + rag_success = result['function'].i_dont_know != True + else: + relevant_sources = [] + # rag_success = None + + start = timeit.default_timer() + + # perhaps move this to a config flag + translated_answer = result['function'].helpful_answer + + translation_enabled = True + + # translate if necessary + if translation_enabled and rag_success and extract_search_queries.userInputLanguageCode != 'en': + translated_answer = await translate_to_language( + result['function'].helpful_answer, extract_search_queries.userInputLanguageName) + + durations['translation'] = round(timeit.default_timer() - start, 1) + durations['total'] = timeit.default_timer() - total_start + + + response = { + 'original_user_query': user_input, + 'english_user_query': extract_search_queries.questionTranslatedToEnglish, + 'user_query_language_code': extract_search_queries.userInputLanguageCode, + 'user_query_language_name': extract_search_queries.userInputLanguageName, + 'english_answer': result['function'].helpful_answer, + 'translated_answer': translated_answer, + 'rag_success': rag_success, + 'search_queries': extract_search_queries.searchQueries, + 'source_urls': loaded_urls, + 'source_documents': loaded_docs, + 'relevant_urls': relevant_sources, + 'not_loaded_urls': not_loaded_urls, + 'durations': durations, + } + + # pp.pprint(response) + + return response \ No newline at end of file diff --git a/docs_qa/rag_manual_stuff.py b/docs_qa/rag_manual_stuff.py index 576d3a8..1919a89 100644 --- a/docs_qa/rag_manual_stuff.py +++ b/docs_qa/rag_manual_stuff.py @@ -35,8 +35,7 @@ class RagPromptReply(BaseModel): helpful_answer: str = Field(..., description="The helpful answer") i_dont_know: bool = Field(..., description="True when unable to answer based on the given context.") relevant_contexts: Sequence[RagContextRefs] = Field(..., description="List of context documents that were relevant when answering the question.") - translated_answer: str = Field(..., description="The translated answer") - + async def rag_with_typesense(user_input): @@ -82,16 +81,43 @@ async def rag_with_typesense(user_input): start = timeit.default_timer() + all_urls = [] + all_docs = [] loaded_docs = [] loaded_urls = [] loaded_search_hits = [] doc_index = 0 docs_length = 0 + # rerank results using ColBERT + + # rerank - step 1 - load all documents in retrieval format + while doc_index < len(search_hits): + search_hit = search_hits[doc_index] + doc_index += 1 + unique_url = search_hit['url'] + + if unique_url in all_urls: + continue + + doc_md = search_hit['content_markdown'] + if len(doc_md) == 0: + continue + + loaded_doc = { + 'page_content': doc_md, + 'metadata': { + 'source': unique_url, + } + } + all_docs.append(loaded_doc) + all_urls.append(unique_url) + + doc_index = 0 + # need to preserve order in documents list # should only append doc if context is not too big - while doc_index < len(search_hits): search_hit = search_hits[doc_index] doc_index += 1 diff --git a/jobs.py b/jobs.py index b6fcd62..5d6c25b 100644 --- a/jobs.py +++ b/jobs.py @@ -1,6 +1,7 @@ import asyncio import argparse from docs_qa import generate_search_phrases +from docs_qa.update_colbert_index import run as update_colbert_index from github_qa.sync_issues import main as sync_issues if 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