Jenkinsfile

// vim: ft=groovy

def NUM_CORES = 8
def errors = []

pipeline {
    agent {
        docker { 
                image '950438895271.dkr.ecr.us-west-2.amazonaws.com/asc-jenkins' 
                registryCredentialsId 'ecr:us-west-2:Jenkins-Manager-Role'
                registryUrl 'https://950438895271.dkr.ecr.us-west-2.amazonaws.com'
                args '--entrypoint= -v /astro_efs:/astro_efs'
               }
    }
    environment {
        ISISDATA        =   '/astro_efs/isis_data'
        ISISTESTDATA    =   '/astro_efs/isis_testData'
        MALLOC_CHECK_   =   1
        ISISROOT        =   "${env.WORKSPACE}/build"
        KAKADU_HEADERS  =   '/astro_efs/kakadu_7_9'
    }
    
    stages {
        stage('Environment Setup') {
            steps {
                sh '''
                . /home/conda/mambaforge3/etc/profile.d/conda.sh > /dev/null
                echo "ISISROOT: ${ISISROOT}"
                
                conda create -y -n isis
                conda activate isis > /dev/null
                conda config --env --set channel_priority flexible
                conda install -c conda-forge python=3 findutils
                mamba env update -f environment.yml --prune
                conda activate isis
                mamba install -c conda-forge git
                git submodule update --init --recursive
                conda list
                '''
            }
        }
        stage('Build') {
            steps {
                sh '''
                . /home/conda/mambaforge3/etc/profile.d/conda.sh > /dev/null
                conda activate isis > /dev/null
                mkdir -p build install
                cd build
                cmake -GNinja -DJP2KFLAG=ON  \
                      -DKAKADU_INCLUDE_DIR=${KAKADU_HEADERS} \
                      -Dpybindings=OFF \
                      -DCMAKE_BUILD_TYPE=RELEASE \
                      -DCMAKE_INSTALL_PREFIX=${CONDA_PREFIX} \
                      ../isis
                ninja -j 8 install
                '''
            }
        }
        stage('GTests') {
            steps {
                catchError(buildResult: 'FAILURE', stageResult: 'FAILURE') {
                    sh '''
                    . /home/conda/mambaforge3/etc/profile.d/conda.sh > /dev/null
                    conda activate isis > /dev/null
                    cd build
                    ctest -R '.' -E '(_app_|_unit_|_module_)' -j 8 --output-on-failure --timeout 10000
                    '''
                }
            }
        }
        stage('Unit Tests') {
            steps {
                catchError(buildResult: 'FAILURE', stageResult: 'FAILURE') {
                    sh '''
                    . /home/conda/mambaforge3/etc/profile.d/conda.sh > /dev/null
                    conda activate isis > /dev/null
                    cd build
                    ctest -R _unit_ -j 8 --output-on-failure
                    '''
                }
            }
        }
        stage('App Tests') {
            steps {
                catchError(buildResult: 'FAILURE', stageResult: 'FAILURE') {
                    sh '''
                    . /home/conda/mambaforge3/etc/profile.d/conda.sh > /dev/null
                    conda activate isis > /dev/null
                    cd build
                    ctest -R _app_ -j 8 --output-on-failure --timeout 10000
                    '''
                }
            }
        }
        stage('Module Tests') {
            steps {
                catchError(buildResult: 'FAILURE', stageResult: 'FAILURE') {
                    sh '''
                    . /home/conda/mambaforge3/etc/profile.d/conda.sh > /dev/null
                    conda activate isis > /dev/null
                    cd build
                    ctest -R _module_ -j 8 --output-on-failure --timeout 10000
                    '''
                }
            }
        }
        stage('Py Tests') {
            environment {
                PATH            =   "${env.WORKSPACE}/install/bin:${env.PATH}"
            }
            steps {
                catchError(buildResult: 'FAILURE', stageResult: 'FAILURE') {
                    sh '''
                    . /home/conda/mambaforge3/etc/profile.d/conda.sh > /dev/null
                    conda activate isis > /dev/null
                    cd build
                    cd $WORKSPACE/isis/pytests 
                    pytest .

                    '''
                }
            }
        }
        stage('Deploy') {
            steps {
                sh '''
                echo "This is where deploy would happen."
                '''
            }
        }
    }
}