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index.Rmd
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---
### Title page
title: "Improving survival prediction models for liver transplantation candidates"
# subtitle: |
# | Prediction models through a clinical lens
# (can also be omitted if you don't have a subtitle)
author: "Ben Felix Jacob Goudsmit" # Your full name (including middle names if applicable)
date: 'woensdag 29 juni 2022' # Your defense date in Dutch: "[weekday] [day in numerics] [name of month] [year]"
aula: true # set to true if your defense is in the Aula; set to false/omit if it is in the Agnietenkapel
time: "15.00" # time of your defense (a 24h time, e.g. "14.00")
# birthplace: "Geleen" # your place of birth, in Dutch
# country_of_birth: "Nederland" # if your birthplace is not in the Netherlands, fill in the country as well (in Dutch). Omit otherwise!
# This paragraph begins with "This thesis was typeset using (R) Markdown, \LaTeX\ and the \verb+bookdown+ R-package"
# and is optionally followed by:
ISBN: "978-94-6419-485-2" # optional, otherwise this bit is omitted
printing: "Gildeprint" # optional, otherwise this bit is omitted
cover: "Cover design by Anke @ Persoonlijk Proefschrift" # optional, otherwise this bit is omitted
# Can be skipped entirely, but if you define THESIS_URL, this will read:
# "An online version of this thesis is available at THESIS_URL [,licensed under a LICENSE.]
thesis_url: "https://bengoudsmit.github.io/Thesis/"
license: "Creative Commons Attribution 4.0 International License" # optional, otherwise this bit is omitted
# Can be skipped entirely, but if you define FUNDER, this will read:
# "The investigations in this thesis were supported by [a] GRANT [from] FUNDER"
grant: "the LUMC biostatistics department, the Dutch Transplant Society, Chipsoft and Chiesi" # optional, otherwise this bit is omitted
# funder: "the Non-existent Organization for Space Exploration (NOSE)"
### Committee
# Fill in each of your "promotores" below, corresponding to the form you submitted to the graduate school.
# Copy-paste the 4 subfields (starting with " - title:") if you have more than two, or delete one entry if you have only one promotor.
promotores:
# for example:
- title: prof. dr. # either "prof.dr" for full professors, or "dr." for others
initials: B.
surname: van Hoek
affiliation: Universiteit Leiden
- title: prof. dr.
initials: H.
surname: Putter
affiliation: Universiteit Leiden
one_promotor: false # set to true if you have only 1 promotor. Then the heading will be "Promotor" (singular), instead of "Promotores".
# Fill in each of your "copromotores" below, corresponding to the form you submitted to the graduate school.
# If you don't have a copromotor, simply delete the fields ("copromotores" and its 4 subfields)
copromotores:
- title: dr.
initials: A.E.
surname: Braat
affiliation: Universiteit Leiden
one_copromotor: true # if true the heading will be "Copromotor" (singular), instead of "Copromotores" (assuming there is a copromotor)
# Fill in each of your committee members below, corresponding to the form you submitted to the graduate school.
# Copy-paste the 4 subfields (starting with " - title:") as many times as you have committee members.
members:
# for example:
- title: prof. dr.
initials: H.J.
surname: Metselaar
affiliation: Erasmus Universiteit Rotterdam
- title: prof. dr.
initials: J.
surname: Pirenne
affiliation: Katholieke Universiteit Leuven
- title: prof. dr.
initials: I.P.J.
surname: Alwayn
affiliation: Universiteit Leiden
- title: prof. dr.
initials: M.
surname: Fiocco
affiliation: Universiteit Leiden
- title: dr.
initials: M.J.
surname: Coenraad
affiliation: Universiteit Leiden
# Finally, the (Dutch) name of your faculty, e.g. "Faculteit der Maatschappij- en Gedragswetenschappen"
faculty: Geneeskunde
### Book settings
documentclass: book # default LaTeX book class
book_size: true # "true" if you want to render a pdf for printing as a book; "false" if you want to print loose pages
# if book_size is set to false, forces A4 paper size, and the "oneside" classoption
# if book_size is set to true, forces standard "thesis B5 size" (170mm wide by 240mm high), and the "twoside" classoption
geometry: "left=2.54cm, right=2.54cm, top=2.54cm, bottom=2.54cm" # use this if you want to change the margins
# 2.5cm equal margins are often recommended by printers (so when book_size: true)
fontsize: 11pt # 12pt is recommened when book_size is false; 10 or 11pt is recommended when book_size is true
lang: en # default language for the thesis. Change to en-GB or en-US if you want a specific flavor of English (or to nl for Dutch)
site: bookdown::bookdown_site # to get a "Build" button in RStudio to render the book
output:
# settings for html output
bookdown::gitbook:
config:
toc:
#this text will print on top ("before") or at the bottom ("after") of the table of contents
before: |
<li><a href="./">Thesis BFJ Goudsmit</a></li>
after: |
<li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>
# pandoc_args: [ "--csl", "apa.csl" ] # download the citation style of your choice from https://www.zotero.org/styles, then fill in here
# settings for pdf output
bookdown::pdf_book:
citation_package: none
template: template.tex
keep_tex: yes
#latex_engine: xelatex
pandoc_args: [ "--csl", "american-medical-association.csl" ] # download the citation style of your choice from https://www.zotero.org/styles, then fill in here
indent: false # indent new paragraphs, instead of leaving whitespace
links-as-notes: true # in the pdf, print hyperlink URLS as footnotes (as they can't be clicked on)
bibliography: library.bib # bib-file containing bibliographic information on all works you want to cite
citation_package: none # to use .csl-files to apply same citation style to html and pdf. You can also use a LaTeX package, e.g. biblatex. This provides much more customizability, but it is not as easy to apply a particular style, and it will only work in pdf output.
link-citations: true # make clickable hyperlinks from in-text citations to bibliography at the end
---
```{r, include = FALSE, child = if (knitr::is_html_output()) '_00-preface.Rmd'}
# see the 00-preface.Rmd file, which will only show in the html version
```