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Add CRAM support #1

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yzhernand opened this issue Apr 27, 2020 · 0 comments
Open

Add CRAM support #1

yzhernand opened this issue Apr 27, 2020 · 0 comments
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enhancement New feature or request

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@yzhernand
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Add an extra option, required when processing CRAM files, for specifying the reference file.

This feature will require a new function for handling CRAM files, but no new dependencies.

Samtools command invocation should look something like: samtools view -T $cram_ref ..., where ... is the rest of the options already given in the existing SAM/BAM file code.
@yzhernand yzhernand added the enhancement New feature or request label Apr 27, 2020
@yzhernand yzhernand self-assigned this Apr 27, 2020
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