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Dockerfile
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FROM ubuntu:jammy@sha256:adbb90115a21969d2fe6fa7f9af4253e16d45f8d4c1e930182610c4731962658
SHELL ["/bin/bash", "-c"]
ENV DISPLAY=:0 \
TZ=Europe/Berlin
ARG USERNAME=vscode
ARG USER_UID=1000
ARG USER_GID=$USER_UID
ARG DEBIAN_FRONTEND=noninteractive
# Add non root user
RUN groupadd --gid $USER_GID $USERNAME \
&& useradd -rm -d /home/$USERNAME -s /bin/bash -g root --uid $USER_UID --gid $USER_GID $USERNAME \
&& addgroup $USERNAME staff
# Create folders to mount extensions
RUN mkdir -p /home/$USERNAME/.vscode-server/extensions \
/home/$USERNAME/.vscode-server-insiders/extensions \
workspaces \
&& chown -R $USERNAME \
/home/$USERNAME/.vscode-server \
/home/$USERNAME/.vscode-server-insiders \
workspaces
# Ubuntu Setup
RUN echo "ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula select true" | debconf-set-selections &&\
apt-get update &&\
apt-get -y --no-install-recommends install \
ca-certificates \
git \
build-essential \
cmake \
ninja-build \
ccache \
gfortran \
netbase \
zip \
unzip \
xclip \
zsh \
lftp \
gnupg2 \
nano \
gdb \
ssh-client \
fontconfig \
pkg-config \
default-libmysqlclient-dev \
ttf-mscorefonts-installer \
locales &&\
locale-gen en_US.UTF-8 &&\
locale-gen de_DE.UTF-8 &&\
update-locale LANG=en_US.UTF-8 &&\
git clone --depth=1 https://github.com/sindresorhus/pure.git /home/$USERNAME/.zsh/pure \
&& rm -rf /home/$USERNAME/.zsh/pure/.git \
&& apt-get autoclean -y \
&& rm -rf /var/lib/apt/lists/*
ENV LC_ALL=en_US.UTF-8 \
LANG=en_US.UTF-8
# Font config
# "LM Roman 10", "Times New Roman" ... use `showtext` package in R
COPY .misc/lmroman10-regular-webfont.ttf /usr/share/fonts/truetype/.
COPY .misc/lmroman10-italic-webfont.ttf /usr/share/fonts/truetype/.
COPY .misc/lmroman10-bolditalic-webfont.ttf /usr/share/fonts/truetype/.
COPY .misc/lmroman10-bold-webfont.ttf /usr/share/fonts/truetype/.
RUN fc-cache -f -v
# Install quarto
ENV QUARTO_VERSION="1.4.551"
COPY install_scripts/install_quarto.sh /install_scripts/install_quarto.sh
RUN chmod +x install_scripts/install_quarto.sh &&\
install_scripts/install_quarto.sh
RUN wget https://github.com/jgm/pandoc/releases/download/3.1.6.2/pandoc-3.1.6.2-1-amd64.deb &&\
dpkg -i pandoc-3.1.6.2-1-amd64.deb
# Install phantomjs
COPY install_scripts/install_phantomjs.sh /install_scripts/install_phantomjs.sh
RUN chmod +x install_scripts/install_phantomjs.sh &&\
install_scripts/install_phantomjs.sh
# Install vcpkg C++ dependency manager
RUN git clone --depth=1 https://github.com/Microsoft/vcpkg --branch 2024.04.26 /usr/local/vcpkg \
&& rm -rf /usr/local/vcpkg/.git \
&& cd /usr/local/vcpkg \
&& ./bootstrap-vcpkg.sh \
&& ./vcpkg integrate install \
&& /usr/local/vcpkg/vcpkg install armadillo \
&& /usr/local/vcpkg/vcpkg install pybind11 \
&& chown --recursive $USERNAME:$USERNAME /usr/local/vcpkg
ENV PATH="/usr/local/vcpkg:${PATH}"
# Install Python CARMA
RUN git clone --depth=1 https://github.com/RUrlus/carma.git /usr/local/carma \
&& rm -rf /usr/local/carma/.git \
&& cd /usr/local/carma \
&& mkdir build \
&& cd build \
&& cmake -DCARMA_INSTALL_LIB=ON .. \
&& cmake --build . --config Release --target install \
&& rm -rf /usr/local/carma
# Install Python
COPY package_lists/python_packages.txt /package_lists/python_packages.txt
RUN apt-get update &&\
apt-get -y --no-install-recommends install \
python3-pip \
python3-dev \
python3-venv && \
# Python packages
pip3 install -U --no-cache-dir \
$(grep -o '^[^#]*' package_lists/python_packages.txt | tr '\n' ' ') \
&& apt-get autoclean -y \
&& rm -rf /var/lib/apt/lists/*
# Set PATH for user installed python packages
ENV PATH="/home/vscode/.local/bin:${PATH}"
# Install Latex
COPY install_scripts/install_latex.sh /install_scripts/install_latex.sh
COPY package_lists/latex_packages.txt /package_lists/latex_packages.txt
RUN chmod +x install_scripts/install_latex.sh &&\
install_scripts/install_latex.sh \
&& export PATH="/usr/local/texlive/bin/x86_64-linux:${PATH}" \
&& tlmgr option -- autobackup 0 \
&& tlmgr option -- docfiles 0 \
&& tlmgr option -- srcfiles 0 \
&& tlmgr install \
$(grep -o '^[^#]*' package_lists/latex_packages.txt | tr '\n' ' ') \
&& chown --recursive $USERNAME:$USERNAME /usr/local/texlive
# Set Latex Path
ENV PATH="/usr/local/texlive/bin/x86_64-linux:${PATH}"
# Install R
ENV R_VERSION=4.4.1
# Set RSPM snapshot see:
# https://packagemanager.posit.co/client/#/repos/cran/setup?r_environment=other&snapshot=2023-10-04&distribution=ubuntu-22.04
ENV R_REPOS=https://packagemanager.posit.co/cran/__linux__/jammy/2024-08-31
COPY install_scripts/install_r.sh /install_scripts/install_r.sh
COPY package_lists/r_packages.txt /package_lists/r_packages.txt
COPY package_lists/r_packages_github.txt /package_lists/r_packages_github.txt
RUN chmod +x install_scripts/install_r.sh &&\
install_scripts/install_r.sh
COPY --chown=$USERNAME .misc/.zshrc /home/$USERNAME/.
COPY --chown=$USERNAME .misc/.Rprofile /home/$USERNAME/.
RUN mkdir /home/$USERNAME/.R && chown -R $USERNAME /home/$USERNAME/.R
COPY --chown=$USERNAME .misc/Makevars /home/$USERNAME/.R/.
RUN mkdir /home/$USERNAME/.ccache && chown -R $USERNAME /home/$USERNAME/.ccache
COPY --chown=$USERNAME .misc/ccache.conf /home/$USERNAME/.ccache/.
RUN chown -R $USERNAME /usr/local/lib
RUN chown -R $USERNAME /usr/local/include
# Switch to non-root user
USER $USERNAME
# Start zsh
CMD [ "zsh" ]