config.py.template

#Wikidata user bot
WDUSER = "BgeeDB-bot"
#Wikidata password
WDPASS = ""
#BGEE sparql endpoint
BGEE_SPARQL_ENDPOINT = "https://bgee.org/sparql/"
#Wikidata sparql endpoint
WD_SPARQL_ENDPOINT = "https://query.wikidata.org/sparql"
#The URL prefix of a gene page
GENE_PAGE_PREFIX = "https://bgee.org/?page=gene&gene_id="
#Set False, if it should overwrite any expressedIn statement in Wikidata
APPEND_DATA = False
#Force overwrite (WARNING: this will permanently remove previous statements)
FORCE_RUN = False
#APPEND_REFERENCE_MODE can be: 'STRICT_KEEP' keeps all references as they are, 'STRICT_KEEP_APPEND' keeps the references
#as they are and appends new ones. 'STRICT_OVERWRITE' overwrites all existing references for given.
APPEND_REFERENCE_MODE = 'STRICT_OVERWRITE'
#The TSV file containing the expression data to be added into wikidata with the columns gene_id and uberon_id ordered by
#descending gene expression score
INPUT_BGEE_DATA_TSV = "bgee_v14_2.tsv"
#Species to be considered defined with wikidata ids and separated with spaces
WD_TAXA_SPACE_SEP = "wd:Q15978631 wd:Q83310"
#Set 0 if it should start from the first gene in the TSV input file, otherwise set a value greater than zero to start
#from another gene
START_GENE_INDEX = 0