README.md

MAPle

MAPle provides three different modules for the analysis of paired-end short read metagenomic data

Dependencies:

TODO

Usage:

usage: Maple.py [-h] indirectory outdirectory config

MAPle - Metagenomic Analysis PipeLinE

positional arguments:
  indirectory   Input directory
  outdirectory  Output directory (script will put renamed raw files in this
                directory and generate all the output here)
  config        Config file including paths to tools and parameters.

optional arguments:
  -h, --help    show this help message and exit

For more information please read the MAPle manual, report bugs and problems to
sina.beier@uni-tuebingen.de