DESCRIPTION

Package: GenomeInfoDb
Title: Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Description: Contains data and functions that
	define and allow translation between different chromosome
	sequence naming conventions (e.g., "chr1" versus "1"),
	including a function that attempts to place sequence names in
	their natural, rather than lexicographic, order.
biocViews: Genetics, DataRepresentation, Annotation, GenomeAnnotation
URL: https://bioconductor.org/packages/GenomeInfoDb
Video: http://youtu.be/wdEjCYSXa7w
BugReports: https://github.com/Bioconductor/GenomeInfoDb/issues
Version: 1.43.2
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Sonali", "Arora", role="aut"),
	person("Martin", "Morgan", role="aut"),
	person("Marc", "Carlson", role="aut"),
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Prisca Chidimma", "Maduka", role="ctb"),
	person("Atuhurira Kirabo", "Kakopo", role="ctb"),
	person("Haleema", "Khan", role="ctb",
		comment="vignette translation from Sweave to Rmarkdown / HTML"),
	person("Emmanuel Chigozie", "Elendu", role="ctb"))
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.53.2),
	S4Vectors (>= 0.45.2), IRanges (>= 2.41.1)
Imports: stats, stats4, utils, UCSC.utils, GenomeInfoDbData
Suggests: R.utils, data.table, GenomicRanges, Rsamtools, GenomicAlignments,
	GenomicFeatures, BSgenome,
	TxDb.Dmelanogaster.UCSC.dm3.ensGene,
	BSgenome.Scerevisiae.UCSC.sacCer2,
	BSgenome.Celegans.UCSC.ce2,
	BSgenome.Hsapiens.NCBI.GRCh38,
	RUnit, BiocStyle, knitr
VignetteBuilder: knitr
Collate: utils.R
	fetch_table_dump_from_Ensembl_FTP.R
	list_ftp_dir.R
	rankSeqlevels.R
	NCBI-utils.R
	UCSC-utils.R
	Ensembl-utils.R
	getChromInfoFromNCBI.R
	getChromInfoFromUCSC.R
	getChromInfoFromEnsembl.R
	loadTaxonomyDb.R
	mapGenomeBuilds.R
	seqinfo.R
	Seqinfo-class.R
	seqlevelsStyle.R
	seqlevels-wrappers.R
	GenomeDescription-class.R
	zzz.R