Use aggregated reading for 1D selections. #1292
Workflow file for this run
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| name: Publish sdist and wheels for macos, and manylinux, publish to pypi if a release | |
| on: [pull_request, push] | |
| env: | |
| apt_options: -o Acquire::Retries=3 | |
| CIBW_BUILD_VERBOSITY: 3 | |
| CIBW_BUILD: 'cp*' | |
| CIBW_SKIP: 'cp35-* cp36-* cp37-* cp38-* *-musllinux_* *-manylinux_i686' | |
| CIBW_TEST_COMMAND: ( cd {project}/python/tests; python -m unittest -v ) | |
| UNIXY_HDF5_VERSION: 1.14.3 | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # macos-13 is an intel runner, macos-14 is apple silicon | |
| os: [ubuntu-20.04, macos-13, macos-14] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - uses: actions/setup-python@v5 | |
| name: Install Python | |
| with: | |
| python-version: '3.11' | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install cibuildwheel | |
| - name: Cache HDF5 On Linux/macOS | |
| if: runner.os == 'Linux' || runner.os == 'macOS' | |
| uses: actions/cache@v3 | |
| id: cache-hdf5-posix | |
| env: | |
| cache-name: cache-hdf5-posix | |
| with: | |
| path: src-cache/ | |
| key: ${{ runner.os }}-build-${{ env.cache-name }} | |
| - name: Build wheels on Linux | |
| if: runner.os == 'Linux' | |
| env: | |
| CIBW_ENVIRONMENT_PASS: "STATIC_HDF5 CMAKE_PREFIX_PATH" | |
| CIBW_BEFORE_BUILD: | | |
| # CMake complains if the dependencies come from within the same tree | |
| # as the source, so we'll just pretend they are elsewhere | |
| mkdir -p /host/home/runner/work/src-cache | |
| ln -s /host/home/runner/work/src-cache /opt/hdf5-static | |
| bash ci/hdf5-build.sh /opt/hdf5-static | |
| run: | | |
| # used by setup.py to decide if to set `FindHDF5` to use static hdf5 libraries | |
| export STATIC_HDF5=True | |
| export CMAKE_PREFIX_PATH=/opt/hdf5-static/install-x86_64/install/ | |
| CIBW_MANYLINUX_X86_64_IMAGE=manylinux2014 python -m cibuildwheel --output-dir dist | |
| CIBW_MANYLINUX_X86_64_IMAGE=manylinux_2_28 python -m cibuildwheel --output-dir dist | |
| - name: Build wheels Mac OS | |
| if: runner.os == 'macOS' | |
| env: | |
| CIBW_ENVIRONMENT_PASS: "STATIC_HDF5 CMAKE_PREFIX_PATH" | |
| CIBW_BEFORE_BUILD: | | |
| # CMake complains if the dependencies come from within the same tree | |
| # as the source, so we'll just pretend they are elsewhere | |
| mkdir -p $PWD/src-cache | |
| ln -s $PWD/src-cache /Users/runner/work/src-cache | |
| bash ci/hdf5-build.sh /Users/runner/work/src-cache | |
| run: | | |
| # used by setup.py to decide if to set `FindHDF5` to use static hdf5 libraries | |
| export STATIC_HDF5=True | |
| export CMAKE_PREFIX_PATH=/Users/runner/work/src-cache/install-`uname -m`/install | |
| python -m cibuildwheel --output-dir dist | |
| - name: Store wheel as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dist-wheels-${{ matrix.os }} | |
| path: dist/*.whl | |
| build_sdist: | |
| name: Build sdist | |
| if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Install packages | |
| run: | | |
| sudo apt-get ${{env.apt_options}} update -y | |
| sudo apt-get ${{env.apt_options}} install -y libhdf5-dev | |
| - name: Build a source tarball, check it installs | |
| run: | |
| ./ci/python_build_sdist.sh | |
| - name: Store sdist as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dist-sdist | |
| path: dist/*.tar.gz | |
| upload_artifacts: | |
| name: Upload wheels to PyPI | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| runs-on: ubuntu-latest | |
| needs: [build_wheels, build_sdist] | |
| steps: | |
| - name: Download artifacts produced during the build_wheels and build_sdist jobs | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: dist-* | |
| path: dist/ | |
| merge-multiple: true | |
| - name: Display structure of downloaded files | |
| run: ls -R | |
| working-directory: dist | |
| - name: Publish package to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_PASSWORD }} | |
| packages_dir: dist/ |