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.gitlab-ci.yml
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.gitlab-ci.yml
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stages:
- merge+setup
- builds
- run
- tests
- cleanup
# Merges MOM6 with dev/gfdl. Changes directory to test directory, if it exists.
before_script:
- MOM6_SRC=$CI_PROJECT_DIR
- echo Cache directory set to ${CACHE_DIR:=/lustre/f2/scratch/oar.gfdl.ogrp-account/runner/cache/}
- git pull --no-edit https://github.com/NOAA-GFDL/MOM6.git dev/gfdl && git submodule init && git submodule update
- pwd ; ls
# Tests that merge with dev/gfdl works.
merge:
stage: merge+setup
tags:
- ncrc4
script:
- pwd ; ls
- git pull --no-edit https://github.com/NOAA-GFDL/MOM6.git dev/gfdl
# Clones regression repo, if necessary, pulls latest of everything, and sets up working space
setup:
stage: merge+setup
tags:
- ncrc4
script:
- pwd ; ls
# Clone regressions directory
- git clone --recursive http://gitlab.gfdl.noaa.gov/ogrp/Gaea-stats-MOM6-examples.git tests && cd tests
# Install / update testing scripts
- git clone -b new-code-struct https://github.com/adcroft/MRS.git MRS
# Update MOM6-examples and submodules
- (cd MOM6-examples && git checkout . && git checkout dev/gfdl && git pull && git submodule init && git submodule update)
- (cd MOM6-examples/src/MOM6 && git submodule update)
- test -d MOM6-examples/src/LM3 || make -f MRS/Makefile.clone clone_gfdl -s
- make -f MRS/Makefile.clone MOM6-examples/.datasets -s
- env > gitlab_session.log
# Show hashes for final setup
- git show --oneline
- git submodule status
- (cd MOM6-examples && git submodule status --recursive src)
# Cache everything under tests to unpack for each subsequent stage
- cd ../ ; time tar zcf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz tests
# Compiles
gnu:repro:
stage: builds
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time make -f MRS/Makefile.build MOM6_SRC=../ build_gnu -s -j
- time make -f MRS/Makefile.build MOM6_SRC=../ static_gnu -s -j
- time tar zvcf $CACHE_DIR/build-gnu-repro-$CI_PIPELINE_ID.tgz `find build/gnu -name MOM6`
gnu:ocean-only-nolibs:
stage: builds
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- make -f MRS/Makefile.build build/gnu/env && cd build/gnu
# mkdir -p build/gnu/repro/symmetric_dynamic/ocean_only && cd build/gnu/repro/symmetric_dynamic/ocean_only
- ../../MOM6-examples/src/mkmf/bin/list_paths -l ../../../config_src/{drivers/solo_driver,memory/dynamic_symmetric,infra/FMS1,ext*} ../../../src ../../MOM6-examples/src/FMS
- sed -i '/FMS\/.*\/test_/d' path_names
- ../../MOM6-examples/src/mkmf/bin/mkmf -t ../../MOM6-examples/src/mkmf/templates/ncrc-gnu.mk -p MOM6 -c"-Duse_libMPI -Duse_netCDF" path_names
- time (source ./env ; make NETCDF=3 REPRO=1 MOM6 -s -j)
gnu:ice-ocean-nolibs:
stage: builds
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- make -f MRS/Makefile.build build/gnu/env && cd build/gnu
# mkdir -p build/gnu/repro/symmetric_dynamic/ocean_only && cd build/gnu/repro/symmetric_dynamic/ocean_only
- ../../MOM6-examples/src/mkmf/bin/list_paths -l ../../../config_src/{drivers/FMS_cap,memory/dynamic_nonsymmetric,infra/FMS1,ext*} ../../../src ../../MOM6-examples/src/{FMS,coupler,SIS2,icebergs,ice_param,land_null,atmos_null}
- sed -i '/FMS\/.*\/test_/d' path_names
- ../../MOM6-examples/src/mkmf/bin/mkmf -t ../../MOM6-examples/src/mkmf/templates/ncrc-gnu.mk -p MOM6 -c"-Duse_libMPI -Duse_netCDF -D_USE_LEGACY_LAND_ -Duse_AM3_physics" path_names
- time (source ./env ; make NETCDF=3 REPRO=1 MOM6 -s -j)
intel:repro:
stage: builds
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- make -f MRS/Makefile.build MOM6_SRC=../ build_intel -s -j
- time tar zvcf $CACHE_DIR/build-intel-repro-$CI_PIPELINE_ID.tgz `find build/intel -name MOM6`
pgi:repro:
stage: builds
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- make -f MRS/Makefile.build MOM6_SRC=../ build_pgi -s -j
- time tar zvcf $CACHE_DIR/build-pgi-repro-$CI_PIPELINE_ID.tgz `find build/pgi -name MOM6`
gnu:debug:
stage: builds
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- make -f MRS/Makefile.build MOM6_SRC=../ debug_gnu -s -j
- time tar zvcf $CACHE_DIR/build-gnu-debug-$CI_PIPELINE_ID.tgz `find build/gnu -name MOM6`
# Runs
run:
stage: run
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/build-gnu-repro-$CI_PIPELINE_ID.tgz
- time tar zxf $CACHE_DIR/build-intel-repro-$CI_PIPELINE_ID.tgz
- time tar zxf $CACHE_DIR/build-pgi-repro-$CI_PIPELINE_ID.tgz
# time tar zxf $CACHE_DIR/build-gnu-debug-$CI_PIPELINE_ID.tgz
- (echo '#!/bin/tcsh';echo 'make -f MRS/Makefile.tests all') > job.sh
- sbatch --clusters=c3,c4 --nodes=29 --time=0:34:00 --account=gfdl_o --qos=debug --job-name=mom6_regressions --output=log.$CI_PIPELINE_ID --wait job.sh || MJOB_RETURN_STATE=Fail
- cat log.$CI_PIPELINE_ID
- test -z "$MJOB_RETURN_STATE"
- test -f restart_results_gnu.tar.gz
- time tar zvcf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz *.tar.gz
gnu.testing:
stage: run
tags:
- ncrc4
script:
- cd .testing
- module unload PrgEnv-pgi PrgEnv-intel PrgEnv-gnu darshan ; module load PrgEnv-gnu ; module unload netcdf gcc ; module load gcc/7.3.0 cray-hdf5 cray-netcdf
- make work/local-env
- make -s -j
- (echo '#!/bin/bash';echo '. ./work/local-env/bin/activate';echo 'make MPIRUN="srun -mblock --exclusive" test -s -j') > job.sh
- sbatch --clusters=c3,c4 --nodes=5 --time=0:05:00 --account=gfdl_o --qos=debug --job-name=MOM6.gnu.testing --output=log.$CI_PIPELINE_ID --wait job.sh || cat log.$CI_PIPELINE_ID && make test
intel.testing:
stage: run
tags:
- ncrc4
script:
- cd .testing
- module unload PrgEnv-pgi PrgEnv-intel PrgEnv-gnu darshan; module load PrgEnv-intel; module unload netcdf intel; module load intel/18.0.6.288 cray-hdf5 cray-netcdf
- make work/local-env
- make -s -j
- (echo '#!/bin/bash';echo '. ./work/local-env/bin/activate';echo 'make MPIRUN="srun -mblock --exclusive" test -s -j') > job.sh
- sbatch --clusters=c3,c4 --nodes=5 --time=0:05:00 --account=gfdl_o --qos=debug --job-name=MOM6.gnu.testing --output=log.$CI_PIPELINE_ID --wait job.sh || cat log.$CI_PIPELINE_ID && make test
# Tests
gnu:non-symmetric:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests gnu_non_symmetric
intel:non-symmetric:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests intel_non_symmetric
pgi:non-symmetric:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests pgi_non_symmetric
gnu:symmetric:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests gnu_symmetric
intel:symmetric:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests intel_symmetric
pgi:symmetric:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests pgi_symmetric
gnu:layout:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests gnu_layout
intel:layout:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests intel_layout
pgi:layout:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests pgi_layout
gnu:static:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests gnu_static
gnu:restart:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests gnu_check_restarts
gnu:params:
stage: tests
tags:
- ncrc4
script:
- time tar zxf $CACHE_DIR/tests_$CI_PIPELINE_ID.tgz && cd tests
- time tar zxf $CACHE_DIR/results-$CI_PIPELINE_ID.tgz
- make -f MRS/Makefile.tests params_gnu_symmetric
allow_failure: true
cleanup:
stage: cleanup
tags:
- ncrc4
script:
- rm $CACHE_DIR/*$CI_PIPELINE_ID.tgz