pyproject.toml

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.poetry]
name = "panCT"
version = "0.1.0"
description = "Tool for calculating genomic sequence complexity"
authors = ["CAST Genomics"]
license = "MIT"
repository = "https://github.com/CAST-genomics/panCT"
homepage = "https://github.com/CAST-genomics/panCT"
documentation = "https://panCT.readthedocs.io"
readme = "README.md"

[tool.poetry.dependencies]
python = ">=3.9"
typer = ">=0.3.2"
click = ">=8.0.3"
numpy = ">=1.23.0"

[tool.poetry.group.docs.dependencies]
Sphinx = ">=4.3.2"
sphinx-autodoc-typehints = ">=1.12.0"
sphinx-rtd-theme = ">=1.0.0"
numpydoc = ">=1.1.0"
sphinx-click = ">=3.0.2"

[tool.poetry.group.tests.dependencies]
pytest = ">=7.4.3"
pytest-cov = ">=3.0.0"
black = ">=23.3.0"
ipython = ">=7.34.0"
coverage = {extras = ["toml"], version = ">=7.2.7"}
filprofiler = ">=2023.3.1"

[tool.poetry.scripts]
panct = 'panct.__main__:app'

[tool.black]
line-length = 88
preview = true

[tool.pytest.ini_options]
log_cli_level = "DEBUG"
log_cli_format = "%(asctime)s [%(levelname)8s] %(message)s (%(filename)s:%(lineno)s)"
log_cli_date_format = "%Y-%m-%d %H:%M:%S"

[tool.pyright]
strictParameterNoneValue = false
ignore = ["**/tests/**"]