IQ-TREE version 1.3.5

July 24, 2015: Version 1.3.5 is released with a few fixes (thanks to Lars Jermiin for finding two issues with model selection):

• Thorough model selection (-mtree) now prints final tree corresponding to best-fit model.
• Fix slightly decreasing log-likelihood for more complex models during new model selection (-m TESTNEW).
• For bootstrap: .iqtree report file now includes log-likelihood of consensus tree and Robinson-Foulds distance between found ML tree and consensus tree.

v1.3.4: July 10, 2015: Version 1.3.4 is released with the following fixes:

Fix support for ascertainment bias correction [+ASC]
For codon models, the site ranges are now counted on number of nucleotides instead of number of codons.
When DNA and codon data are mixed in partition model, branch lengths are now interpreted as #nucleotide substitutions per nucleotide site. Note that for codon data, branch lengths are #nucleotide substitutions per codon site like PAML.
Fix usage of -spp with -m TESTMERGE.
Fix ML optimization of amino-acid frequencies [+FO].
Fix memory deallocation when using -m TEST for Windows version.