Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Integrate the package with tidyomics #76

Open
4 tasks
AliSajid opened this issue Aug 16, 2024 · 0 comments
Open
4 tasks

Integrate the package with tidyomics #76

AliSajid opened this issue Aug 16, 2024 · 0 comments
Assignees
Labels
bioconductor enhancement New feature or request

Comments

@AliSajid
Copy link
Collaborator

This is one of the tasks for #62

According to reviewer comments, the integration with the BioConductor ecosystem is minimal. They have suggested integrating this with the BioConductor ecosystem using the tidyomics set of packages and classes, which allows for dplyr-like manipulation of native BioConductor data structures.

This is broken down into following sub-tasks:

  • Explore the tidyomics documentation for integration with the package
  • Evaluate the extent of modification needed for the integration
  • Convert the initial data loading to use summarizedExperiment
  • Fully integrate the tidyomics data structures into the package
@AliSajid AliSajid added enhancement New feature or request bioconductor labels Aug 16, 2024
@AliSajid AliSajid added this to the Bioconductor-Resubmission milestone Aug 16, 2024
@AliSajid AliSajid self-assigned this Aug 16, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bioconductor enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant