tests.yaml

# Based on github template: https://github.com/actions/starter-workflows/blob/main/ci/python-package.yml

name: Tests

on:
  schedule:
    - cron: '0 9 * * 1' # run every Monday at 9 AM UTC (3 am PST)
  push:
    branches:
      - '**'
    tags-ignore:
      - '*.*'
  pull_request:
  workflow_dispatch:

jobs:
  build:
    name: ${{ matrix.python-version }}, ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ ubuntu-latest, macos-latest, windows-latest ]
        python-version: ['3.12', '3.11', '3.10'] # ['3.8', '3.x']
        # exclude:
        #   # tests with ubuntu-latest, python latest
        #   # are executed by build_docs.yaml
        #   - os: ubuntu-latest
        #     python-version: 3.12

    steps:
    - name: Checkout source
      uses: actions/checkout@v4
      with:
        persist-credentials: false

    - name: Fetch all Git tags
      run: git fetch --prune --unshallow --tags

    - name: Setup Micromamba
      uses: mamba-org/setup-micromamba@v1
      with:
        environment-file: ci/test_environment.yml
        cache-environment: false
        cache-downloads: false
        # persist on the same day.
        # cache-environment-key: environment-${{ steps.date.outputs.date }}
        # cache-downloads-key: downloads-${{ steps.date.outputs.date }}
        create-args: >-
          python=${{ matrix.python-version }}
        init-shell: >-
          bash

    - name: Conda info
      shell: bash -l {0}
      run: micromamba info
    - name: Install dependencies
      shell: bash -l {0}
      run: |
        if [[ ! -d "$HOME/.local/bin" ]]; then
            mkdir -p "$HOME/.local/bin";
        fi
        # copy modflow bins to local dir to add to PATH later
        if [ "$RUNNER_OS" == "Windows" ]; then
            d="win"
        elif [ "$RUNNER_OS" == "macOS" ]; then
            d="mac"
        elif [ "$RUNNER_OS" == "Linux" ]; then
            d="linux"
        else
            d="unexpectedos"
            exit 1
        fi
        echo bin/$d/. >> $GITHUB_PATH
        echo $GITHUB_PATH
    - name: Test install from git
      shell: bash -l {0}
      run: |
        pip install git+https://github.com/doi-usgs/sfrmaker@develop
        cd ..
        python -c "import sfrmaker"
        cd sfrmaker
    - name: Install SFRmaker and ipykernel
      shell: bash -l {0}
      run: |
        pip install -e .
        python -m ipykernel install --user --name sfrmaker_ci --display-name "sfrmaker_ci"
    - name: Test with latest PyPI flopy
      shell: bash -l {0}
      if: ${{ matrix.python-version == 3.11}}
      run: pip install flopy --force-reinstall
    - name: Conda list
      shell: bash -l {0}
      run: |
        micromamba list
        pip list
    #- name: Lint with flake8
    #  run: |
    #    # stop the build if there are Python syntax errors or undefined names
    #    flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
    #    # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
    #    flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Run tests and upload coverage
      shell: bash -l {0}
      timeout-minutes: 60
      run: |
        coverage run -m pytest -v --durations=20 --timeout=120
    - name: Upload coverage
      shell: bash -l {0}
      run: |
        coverage report -m
        codecov