Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

tophat-2.0.14 :: tophat-fusion-post bad samtools call #47

Open
EricDeveaud opened this issue Jun 6, 2017 · 0 comments
Open

tophat-2.0.14 :: tophat-fusion-post bad samtools call #47

EricDeveaud opened this issue Jun 6, 2017 · 0 comments

Comments

@EricDeveaud
Copy link

Hello,

samtools binary is installed as samtools_0.1.18

tophat-fusion-post calls samtools as samtools not samtools_0.1.18 on line 1220

1220  cmd = ['samtools', 'view', '-h', bam]

regards

Eric
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@EricDeveaud