MyModelMenagerie

This is just a store for a couple of input-output differential equation models I can test stuff on.

How to use:

1. Make an input function

t -> input(t)

2. In julia, call

 od, ic, tspan, ps = ModelName(input)

So eg

od, ic, tspan, ps = NFKBModel(sin)
od, ic, tspan, ps = CircadianOscillator(t -> 0.)

Now you can use the DifferentialEquations.jl ecosystem to solve the equation. e.g.

using OrdinaryDiffEq
prob = ODEProblem(od,ic,tspan,ps)
sol = solve(prob, Tsit5())

Of course, you can alter the parameter values and initial conditions, accessed as

vals = last.(ps)
vals[1] += 1
ps = first.(ps) .=> vals

(same for initial conditions)

Notes

Most of the models here are buit using ModelingToolkit.jl.