diff --git a/docker/Dockerfile b/docker/Dockerfile new file mode 100644 index 0000000..f04402a --- /dev/null +++ b/docker/Dockerfile @@ -0,0 +1,14 @@ +FROM ubuntu:latest +ENV DEBIAN_FRONTEND=noninteractive + +RUN apt-get update \ + && apt install -y git python3-pip hmmer prodigal pplacer wget \ + && pip3 install numpy matplotlib pysam checkm-genome + +RUN wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_16.tar.gz && tar -zxvf checkm_data_2015_01_16.tar.gz +RUN rm checkm_data_2015_01_16.tar.gz + +ENV CHECKM_DATA_PATH=/ +ENV PATH="$HOME/.local/bin:$PATH" +CMD checkm +