From fd793cfb3bd713ebf2f4fa5da2f79a0f721f629e Mon Sep 17 00:00:00 2001
From: lmgueguen <lm.gueguen@orange.fr>
Date: Tue, 27 Jun 2023 15:50:42 -0400
Subject: [PATCH] added the dockerfile for checkm

---
 docker/Dockerfile | 14 ++++++++++++++
 1 file changed, 14 insertions(+)
 create mode 100644 docker/Dockerfile

diff --git a/docker/Dockerfile b/docker/Dockerfile
new file mode 100644
index 0000000..f04402a
--- /dev/null
+++ b/docker/Dockerfile
@@ -0,0 +1,14 @@
+FROM ubuntu:latest
+ENV DEBIAN_FRONTEND=noninteractive
+
+RUN apt-get update \
+    && apt install -y git python3-pip hmmer prodigal pplacer wget \
+    && pip3 install numpy matplotlib pysam checkm-genome
+
+RUN wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_16.tar.gz && tar -zxvf checkm_data_2015_01_16.tar.gz 
+RUN rm checkm_data_2015_01_16.tar.gz
+
+ENV CHECKM_DATA_PATH=/
+ENV PATH="$HOME/.local/bin:$PATH"
+CMD checkm	
+