raxml.rb

# Licensed under the Apache License, Version 2.0 (the License);
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#     http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an AS IS BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

class Raxml < Formula
  homepage 'https://github.com/stamatak/standard-RAxML'
  desc 'Phylogenetic Analysis and Post-Analysis of Large Phylogenies'
  url 'https://github.com/stamatak/standard-RAxML/archive/v8.2.8.tar.gz'
  sha256 'a99bd3c5fcd640eecd6efa3023f5009c13c04a9b1cea6598c53daa5349f496b6'
  version '8.2.8'

  depends_on 'openmpi' => ["with-cxx-bindings"]
  needs :openmp
  
  def install
    #Define the portable pthreads to give a performance boost
    inreplace 'axml.c', '#define _PORTABLE_PTHREADS', ''
    system 'make', '-f', 'Makefile.AVX.gcc'
    rm Dir['*.o']
    system 'make', '-f', 'Makefile.AVX.PTHREADS.gcc'
    rm Dir['*.o']
    system 'make', '-f', 'Makefile.SSE3.gcc'
    rm Dir['*.o']
    system 'make', '-f', 'Makefile.SSE3.PTHREADS.gcc'

    %w(AVX PTHREADS-AVX SSE3 PTHREADS-SSE3).each do | ext |
      bin.install "raxmlHPC-#{ext}"
    end
  end
end