diff --git a/package-lock.json b/package-lock.json
index 463cff0..c4160e3 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -12,14 +12,14 @@
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         "chalk": "^4.1.2",
         "commander": "^12.1.0",
-        "diff": "^6.0.0-beta",
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         "fs-extra": "^11.2.0",
         "fsh-sushi": "^3.12.0",
-        "ini": "^4.1.3",
+        "ini": "^5.0.0",
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         "readline-sync": "^1.4.10",
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@@ -28,32 +28,32 @@
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         "valid-url": "^1.0.9",
-        "winston": "^3.14.2",
-        "yaml": "^2.5.0"
+        "winston": "^3.15.0",
+        "yaml": "^2.6.0"
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         "gofsh": "dist/app.js"
       },
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-        "@types/jest": "^29.5.12",
-        "@types/lodash": "^4.17.7",
-        "@types/node": "^20.16.1",
+        "@types/jest": "^29.5.14",
+        "@types/lodash": "^4.17.12",
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@@ -783,6 +794,43 @@
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+      "resolved": "https://registry.npmjs.org/@eslint/plugin-kit/-/plugin-kit-0.2.2.tgz",
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+      "license": "Apache-2.0",
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+      "license": "Apache-2.0",
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+      "license": "Apache-2.0",
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+      "license": "Apache-2.0",
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@@ -1187,6 +1237,7 @@
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@@ -1196,6 +1247,7 @@
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+      "resolved": "https://registry.npmjs.org/@types/diff/-/diff-5.2.3.tgz",
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+      "license": "MIT"
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+      "resolved": "https://registry.npmjs.org/@types/estree/-/estree-1.0.6.tgz",
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@@ -1372,15 +1432,23 @@
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+      "resolved": "https://registry.npmjs.org/@types/jest/-/jest-29.5.14.tgz",
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+      "license": "MIT",
       "dependencies": {
         "expect": "^29.0.0",
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+    "node_modules/@types/json-schema": {
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+      "resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.15.tgz",
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@@ -1391,16 +1459,18 @@
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@@ -1471,16 +1541,17 @@
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@@ -1532,13 +1604,14 @@
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@@ -1586,13 +1661,14 @@
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-          "resolved": "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-4.0.0.tgz",
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+          "version": "4.1.0",
+          "resolved": "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-4.1.0.tgz",
+          "integrity": "sha512-Q7lok0mqMUSf5a/AdAZkA5a/gHcO6snwQClVNNvFKCAVlxXucdU8pKydU5ZVZjBx5xr37vGbFFWtLQYreLzrZg==",
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         }
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@@ -8633,6 +8776,11 @@
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+        "ini": {
+          "version": "4.1.3",
+          "resolved": "https://registry.npmjs.org/ini/-/ini-4.1.3.tgz",
+          "integrity": "sha512-X7rqawQBvfdjS10YU1y1YVreA3SsLrW9dX2CewP2EbBJM4ypVNLDkO5y04gejPwKIY9lR+7r9gn3rFPt/kmWFg=="
+        },
         "json-schema-traverse": {
           "version": "1.0.0",
           "resolved": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-1.0.0.tgz",
@@ -8886,9 +9034,9 @@
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     },
     "ini": {
-      "version": "4.1.3",
-      "resolved": "https://registry.npmjs.org/ini/-/ini-4.1.3.tgz",
-      "integrity": "sha512-X7rqawQBvfdjS10YU1y1YVreA3SsLrW9dX2CewP2EbBJM4ypVNLDkO5y04gejPwKIY9lR+7r9gn3rFPt/kmWFg=="
+      "version": "5.0.0",
+      "resolved": "https://registry.npmjs.org/ini/-/ini-5.0.0.tgz",
+      "integrity": "sha512-+N0ngpO3e7cRUWOJAS7qw0IZIVc6XPrW4MlFBdD066F2L4k1L6ker3hLqSq7iXxU5tgS4WGkIUElWn5vogAEnw=="
     },
     "is-arrayish": {
       "version": "0.2.1",
@@ -8938,12 +9086,6 @@
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       "dev": true
     },
-    "is-path-inside": {
-      "version": "3.0.3",
-      "resolved": "https://registry.npmjs.org/is-path-inside/-/is-path-inside-3.0.3.tgz",
-      "integrity": "sha512-Fd4gABb+ycGAmKou8eMftCupSir5lRxqf4aD/vd0cD2qc4HL07OjCeuHMr8Ro4CoMaeCKDB0/ECBOVWjTwUvPQ==",
-      "dev": true
-    },
     "is-stream": {
       "version": "2.0.1",
       "resolved": "https://registry.npmjs.org/is-stream/-/is-stream-2.0.1.tgz",
@@ -10570,9 +10712,9 @@
       "dev": true
     },
     "typescript": {
-      "version": "5.5.4",
-      "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.5.4.tgz",
-      "integrity": "sha512-Mtq29sKDAEYP7aljRgtPOpTvOfbwRWlS6dPRzwjdE+C0R4brX/GUyhHSecbHMFLNBLcJIPt9nl9yG5TZ1weH+Q==",
+      "version": "5.6.3",
+      "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.6.3.tgz",
+      "integrity": "sha512-hjcS1mhfuyi4WW8IWtjP7brDrG2cuDZukyrYrSauoXGNgx0S7zceP07adYkJycEr56BOUTNPzbInooiN3fn1qw==",
       "dev": true
     },
     "undici-types": {
@@ -10662,9 +10804,9 @@
       }
     },
     "winston": {
-      "version": "3.14.2",
-      "resolved": "https://registry.npmjs.org/winston/-/winston-3.14.2.tgz",
-      "integrity": "sha512-CO8cdpBB2yqzEf8v895L+GNKYJiEq8eKlHU38af3snQBQ+sdAIUepjMSguOIJC7ICbzm0ZI+Af2If4vIJrtmOg==",
+      "version": "3.15.0",
+      "resolved": "https://registry.npmjs.org/winston/-/winston-3.15.0.tgz",
+      "integrity": "sha512-RhruH2Cj0bV0WgNL+lOfoUBI4DVfdUNjVnJGVovWZmrcKtrFTTRzgXYK2O9cymSGjrERCtaAeHwMNnUWXlwZow==",
       "requires": {
         "@colors/colors": "^1.6.0",
         "@dabh/diagnostics": "^2.0.2",
@@ -10733,9 +10875,9 @@
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     },
     "yaml": {
-      "version": "2.5.0",
-      "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.5.0.tgz",
-      "integrity": "sha512-2wWLbGbYDiSqqIKoPjar3MPgB94ErzCtrNE1FdqGuaO0pi2JGjmE8aW8TDZwzU7vuxcGRdL/4gPQwQ7hD5AMSw=="
+      "version": "2.6.0",
+      "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.6.0.tgz",
+      "integrity": "sha512-a6ae//JvKDEra2kdi1qzCyrJW/WZCgFi8ydDV+eXExl95t+5R+ijnqHJbz9tmMh8FUjx3iv2fCQ4dclAQlO2UQ=="
     },
     "yargs": {
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diff --git a/package.json b/package.json
index 21aa5fd..c46c248 100644
--- a/package.json
+++ b/package.json
@@ -39,24 +39,24 @@
   "license": "Apache-2.0",
   "devDependencies": {
     "@types/antlr4": "^4.11.6",
-    "@types/diff": "^5.2.1",
+    "@types/diff": "^5.2.3",
     "@types/flat": "^5.0.5",
     "@types/fs-extra": "^11.0.4",
     "@types/hogan.js": "^3.0.5",
     "@types/ini": "^4.1.1",
-    "@types/jest": "^29.5.12",
-    "@types/lodash": "^4.17.7",
-    "@types/node": "^20.16.1",
+    "@types/jest": "^29.5.14",
+    "@types/lodash": "^4.17.12",
+    "@types/node": "^20.17.1",
     "@types/readline-sync": "^1.4.8",
     "@types/semver": "^7.5.8",
     "@types/temp": "^0.9.4",
     "@types/text-table": "^0.2.5",
     "@types/toposort": "^2.0.7",
     "@types/valid-url": "^1.0.7",
-    "@typescript-eslint/eslint-plugin": "^8.3.0",
-    "@typescript-eslint/parser": "^8.3.0",
+    "@typescript-eslint/eslint-plugin": "^8.12.0",
+    "@typescript-eslint/parser": "^8.12.0",
     "copyfiles": "^2.4.1",
-    "eslint": "^9.9.1",
+    "eslint": "^9.13.0",
     "eslint-config-prettier": "^9.1.0",
     "jest": "^29.7.0",
     "jest-extended": "^4.0.2",
@@ -64,20 +64,20 @@
     "prettier": "^3.3.3",
     "ts-jest": "^29.1.5",
     "ts-node": "^10.9.2",
-    "typescript": "^5.5.4"
+    "typescript": "^5.6.3"
   },
   "dependencies": {
     "antlr4": "^4.13.2",
     "chalk": "^4.1.2",
     "commander": "^12.1.0",
-    "diff": "^6.0.0-beta",
+    "diff": "^7.0.0",
     "diff2html": "^3.4.48",
     "fhir": "^4.12.0",
     "fhir-package-loader": "^1.0.0",
     "flat": "^5.0.2",
     "fs-extra": "^11.2.0",
     "fsh-sushi": "^3.12.0",
-    "ini": "^4.1.3",
+    "ini": "^5.0.0",
     "lodash": "^4.17.21",
     "readline-sync": "^1.4.10",
     "sanitize-filename": "^1.6.3",
@@ -86,8 +86,8 @@
     "text-table": "^0.2.0",
     "toposort": "^2.0.2",
     "valid-url": "^1.0.9",
-    "winston": "^3.14.2",
-    "yaml": "^2.5.0"
+    "winston": "^3.15.0",
+    "yaml": "^2.6.0"
   },
   "overrides": {
     "semver": "$semver"