pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.fephyfofym</groupId>
  <artifactId>genetreemachine</artifactId>
  <version>0.0.1-SNAPSHOT</version>
  <name>genetreemachine</name>
  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
  </properties>
  <dependencies>
    <dependency>
        <groupId>org.neo4j</groupId>
        <artifactId>neo4j</artifactId>
        <version>1.8.M05</version>
    </dependency>
    <dependency>
      <groupId>org.neo4j</groupId>
      <artifactId>server-api</artifactId>
      <version>1.8.M05</version>
    </dependency>
    <dependency>
      <groupId>log4j</groupId>
      <artifactId>log4j</artifactId>
      <version>1.2.17</version>
    </dependency>
    <dependency>
        <groupId>org.neo4j</groupId>
        <artifactId>neo4j-kernel</artifactId>
        <version>1.8.M05</version>
        <type>test-jar</type>
        <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.8.1</version>
      <scope>test</scope>
    </dependency>
	<dependency>
		<groupId>commons-collections</groupId>
		<artifactId>commons-collections</artifactId>
		<version>3.0</version>
	</dependency>
    <dependency>
    	<groupId>com.googlecode.json-simple</groupId>
    	<artifactId>json-simple</artifactId>
    	<version>1.1.1</version>
    </dependency>
	<dependency>
      <groupId>com.sun.jersey</groupId>
      <artifactId>jersey-client</artifactId>
      <version>1.17.1</version>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-lang3</artifactId>
      <version>3.1</version>
    </dependency>
    <dependency>
	  <groupId>net.sf.trove4j</groupId>
	  <artifactId>trove4j</artifactId>
	  <version>3.0.3</version>
     </dependency>       
</dependencies>
  <build>
    <plugins>
        <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-assembly-plugin</artifactId>
            <configuration>
                <archive>
                    <manifest>
                        <mainClass>fephyfofum.genetreemachine.MainRunner</mainClass>
                    </manifest>
                </archive>
                <descriptorRefs>
                    <descriptorRef>jar-with-dependencies</descriptorRef>
                </descriptorRefs>
            </configuration>
        </plugin>
        <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-compiler-plugin</artifactId>
            <version>2.5</version>
            <configuration>
                <source>1.6</source>
                <target>1.6</target>
            </configuration>
        </plugin>
    </plugins>
  </build>
</project>