diff --git a/.github/workflows/uberon-integration.yml b/.github/workflows/uberon-integration.yml index a057c67b1..5ac0082a1 100644 --- a/.github/workflows/uberon-integration.yml +++ b/.github/workflows/uberon-integration.yml @@ -7,7 +7,7 @@ on: jobs: uberon_integration: runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.4.3 + container: obolibrary/odkfull:v1.5 steps: @@ -31,7 +31,7 @@ jobs: - name: Build FBbt run: | cd fbbt/src/ontology - make fbbt.owl mappings.sssom.tsv MIR=false IMP=false PAT=false + make fbbt.owl ../mappings/fbbt.sssom.tsv MIR=false IMP=false PAT=false - name: Build Uberon run: | @@ -50,7 +50,7 @@ jobs: robot merge -i fbbt/src/ontology/fbbt.owl \ -i uberon/src/ontology/uberon.owl \ -i cl/src/ontology/cl.owl \ - sssom:inject --sssom fbbt/src/ontology/mappings.sssom.tsv \ + sssom:inject --sssom fbbt/src/mappings/fbbt.sssom.tsv \ --ruleset fbbt/src/scripts/bridging.rules \ annotate --ontology-iri http://purl.obolibrary.org/obo/fbbt/fbbt-uberon-cl-merge.owl \ --output fbbt-uberon-cl-merge.owl \