readme.md

spex/backend

Getting Started

Download links:

SSH clone URL: git@ssh.code.roche.com:spex/backend.git

HTTPS clone URL: https://code.roche.com/spex/backend.git

These instructions will get you a copy of the project up and running on your local machine for development and testing purposes.

Production

1. Make symbolic links in of all microservices from ../microservices to ./microservices
2. copy ./microservices/.env.common to ./microservices/.env.common.local and specify correct values for OMERO_HOST and OMERO_WEB
3. copy .env to .env.local and specify correct values for variables
4. Set needed path in environment variable HOST_DATA_STORAGE
5. $ export HOST_DATA_STORAGE=<path> && docker-compose up -d --build

Deployment

1. Memcached

$ docker run --name spex_memcached -p 11211:11211 -d memcached memcached -m 64

2. Redis

$ cd ./microservices/redis  
$ docker build --pull --rm -t spex_redisjson .
$ docker run -p 6379:6379 --name spex_redisjson -d spex_redisjson
$ cd ../..

3. ArangoDB

$ docker run -p 8529:8529 -e ARANGO_ROOT_PASSWORD=pass --name spex_arangodb -d arangodb:3.7.7

will set user/password

user: root
pass: pass

4. Copy .env.development to .env.development.local

5. Set the following variables:

ARANGODB_DATABASE_URL=http://localhost:8529

REDIS_HOST=localhost
REDIS_PORT=6379
REDIS_SESSION_ALIVE_H=12

DATA_STORAGE=${TEMP}\\DATA_STORAGE

6. Run server

$ pip install pipenv 
$ pipenv install --system --deploy --ignore-pipfile
$ pipenv shell
$ pip install itsdangerous==2.0.1
$ export MODE=development
$ python ./app.py

7. for start all microservices

copy ./microservices/.env.common to ./microservices/.env.common.local and specify correct values for OMERO_HOST and OMERO_WEB
$ docker-compose -f ./microservices/docker-compose.yml --project-directory ./microservices up -d --build

Resources

Add links to external resources for this project, such as CI server, bug tracker, etc.