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environment.yml
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environment.yml
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name: c3d
channels:
- bioconda
- pytorch
- nvidia
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- anyio=4.0.0=pyhd8ed1ab_0
- arrow=1.2.3=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- backoff=2.2.1=pyhd8ed1ab_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0
- beautifulsoup4=4.12.2=pyha770c72_0
- blas=1.0=mkl
- blessed=1.19.1=pyhe4f9e05_2
- brotlipy=0.7.0=py39h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2023.08.22=h06a4308_0
- cachecontrol=0.12.11=py39h06a4308_1
- certifi=2023.7.22=py39h06a4308_0
- cffi=1.15.1=py39h5eee18b_3
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cleo=2.0.1=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- colorama=0.4.6=pyhd8ed1ab_0
- crashtest=0.4.1=pyhd8ed1ab_0
- croniter=1.4.1=pyhd8ed1ab_0
- cryptography=41.0.2=py39h22a60cf_0
- cuda-cudart=11.7.99=0
- cuda-cupti=11.7.101=0
- cuda-libraries=11.7.1=0
- cuda-nvrtc=11.7.99=0
- cuda-nvtx=11.7.91=0
- cuda-runtime=11.7.1=0
- cudatoolkit=10.2.89=hfd86e86_1
- dateutils=0.6.12=py_0
- dbus=1.13.6=he372182_0
- deepdiff=5.8.1=pyhd8ed1ab_0
- distlib=0.3.7=pyhd8ed1ab_0
- dulwich=0.21.3=py39h5eee18b_0
- exceptiongroup=1.1.3=pyhd8ed1ab_0
- expat=2.2.10=h9c3ff4c_0
- fastapi=0.99.1=pyhd8ed1ab_0
- ffmpeg=4.3=hf484d3e_0
- filelock=3.9.0=py39h06a4308_0
- freetype=2.12.1=h4a9f257_0
- fsspec=2023.9.0=pyh1a96a4e_0
- giflib=5.2.1=h5eee18b_3
- glib=2.69.1=he621ea3_2
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py39heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- h11=0.14.0=pyhd8ed1ab_0
- html5lib=1.1=pyh9f0ad1d_0
- idna=3.4=py39h06a4308_0
- importlib-metadata=6.8.0=pyha770c72_0
- importlib_metadata=6.8.0=hd8ed1ab_0
- importlib_resources=6.0.1=pyhd8ed1ab_0
- inquirer=3.1.3=pyhd8ed1ab_0
- intel-openmp=2023.1.0=hdb19cb5_46305
- itsdangerous=2.1.2=pyhd8ed1ab_0
- jaraco.classes=3.3.0=pyhd8ed1ab_0
- jeepney=0.8.0=pyhd8ed1ab_0
- jinja2=3.1.2=py39h06a4308_0
- joblib=1.2.0=py39h06a4308_0
- jpeg=9e=h5eee18b_1
- jsonschema=4.17.3=pyhd8ed1ab_0
- keyring=23.13.1=py39hf3d152e_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libcublas=11.10.3.66=0
- libcufft=10.7.2.124=h4fbf590_0
- libcufile=1.7.2.10=0
- libcurand=10.3.3.141=0
- libcusolver=11.4.0.1=0
- libcusparse=11.7.4.91=0
- libdeflate=1.17=h5eee18b_0
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libnpp=11.7.4.75=0
- libnvjpeg=11.8.0.2=0
- libpng=1.6.39=h5eee18b_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h27cfd23_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- lightning=2.0.8=pyhd8ed1ab_0
- lightning-cloud=0.5.37=pyhd8ed1ab_0
- lightning-utilities=0.9.0=pyhd8ed1ab_0
- lockfile=0.12.2=py_1
- lz4-c=1.9.4=h6a678d5_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.1=py39h7f8727e_0
- mdurl=0.1.0=pyhd8ed1ab_0
- mkl=2023.1.0=h213fc3f_46343
- mkl-service=2.4.0=py39h5eee18b_1
- mkl_fft=1.3.6=py39h417a72b_1
- mkl_random=1.2.2=py39h417a72b_1
- more-itertools=10.1.0=pyhd8ed1ab_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py39h06a4308_0
- msgpack-python=1.0.3=py39hd09550d_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py39h06a4308_0
- numpy=1.25.2=py39h5f9d8c6_0
- numpy-base=1.25.2=py39hb5e798b_0
- openh264=2.1.1=h4ff587b_0
- openssl=3.0.10=h7f8727e_2
- ordered-set=4.1.0=pyhd8ed1ab_0
- p7zip=15.09=h2d50403_4
- packaging=23.1=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pexpect=4.8.0=pyh1a96a4e_2
- pillow=9.4.0=py39h6a678d5_0
- pip=23.2.1=py39h06a4308_0
- pkginfo=1.9.6=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=2.5.2=py39h06a4308_0
- poetry=1.4.0=py39h06a4308_0
- poetry-core=1.5.1=py39h06a4308_0
- poetry-plugin-export=1.3.0=py39h4849bfd_0
- psutil=5.9.0=py39h5eee18b_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.21=pyhd3eb1b0_0
- pydantic=1.10.8=py39h5eee18b_0
- pygments=2.16.1=pyhd8ed1ab_0
- pyjwt=2.8.0=pyhd8ed1ab_0
- pyopenssl=23.2.0=py39h06a4308_0
- pyproject_hooks=1.0.0=pyhd8ed1ab_0
- pyrsistent=0.18.0=py39heee7806_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.17=h955ad1f_0
- python-build=0.10.0=pyhd8ed1ab_1
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-editor=1.0.4=py_0
- python-installer=0.6.0=py39h06a4308_0
- python-multipart=0.0.6=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pytorch=1.12.1=py3.9_cuda10.2_cudnn7.6.5_0
- pytorch-cuda=11.7=h778d358_5
- pytorch-lightning=2.0.8=pyhd8ed1ab_0
- pytorch-mutex=1.0=cuda
- pytz=2023.3.post1=pyhd8ed1ab_0
- pyyaml=6.0=py39hb9d737c_4
- rapidfuzz=2.13.7=py39h417a72b_0
- readchar=4.0.5=pyhd8ed1ab_0
- readline=8.2=h5eee18b_0
- requests=2.31.0=py39h06a4308_0
- requests-toolbelt=0.10.1=pyhd8ed1ab_0
- rich=13.5.1=pyhd8ed1ab_0
- scikit-learn=1.3.0=py39h1128e8f_0
- scipy=1.11.1=py39h5f9d8c6_0
- secretstorage=3.3.3=py39hf3d152e_1
- setuptools=68.0.0=py39h06a4308_0
- shellingham=1.5.3=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.0=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- sqlite=3.41.2=h5eee18b_0
- starlette=0.27.0=pyhd8ed1ab_0
- starsessions=1.3.0=pyhd8ed1ab_0
- sympy=1.11.1=py39h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.12=h1ccaba5_0
- tomli=2.0.1=pyhd8ed1ab_0
- tomlkit=0.12.1=pyha770c72_0
- torchaudio=0.12.1=py39_cu102
- torchmetrics=1.1.1=pyhd8ed1ab_0
- torchtriton=2.0.0=py39
- torchvision=0.13.1=py39_cu102
- tqdm=4.66.1=pyhd8ed1ab_0
- traitlets=5.9.0=pyhd8ed1ab_0
- trove-classifiers=2023.8.7=pyhd8ed1ab_0
- typing-extensions=4.7.1=py39h06a4308_0
- typing_extensions=4.7.1=py39h06a4308_0
- tzdata=2023c=h04d1e81_0
- urllib3=1.26.16=py39h06a4308_0
- uvicorn=0.23.2=py39hf3d152e_0
- virtualenv=20.17.1=py39hf3d152e_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webencodings=0.5.1=py_1
- websocket-client=1.6.2=pyhd8ed1ab_0
- websockets=10.4=py39h5eee18b_1
- wheel=0.38.4=py39h06a4308_0
- xz=5.4.2=h5eee18b_0
- yaml=0.2.5=h7f98852_2
- zipp=3.16.2=pyhd8ed1ab_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- appdirs==1.4.4
- docker-pycreds==0.4.0
- gitdb==4.0.10
- gitpython==3.1.36
- iniconfig==2.0.0
- opencv-python==4.8.0.76
- pathtools==0.1.2
- pluggy==1.3.0
- protobuf==4.24.3
- pytest==7.4.2
- sentry-sdk==1.31.0
- setproctitle==1.3.2
- smmap==5.0.0
- wandb==0.15.10