From 662a0eb2396d3e81ad64b3b867abe6ea35856d43 Mon Sep 17 00:00:00 2001 From: Philip Hackstock <20710924+phackstock@users.noreply.github.com> Date: Mon, 18 Dec 2023 10:54:36 +0100 Subject: [PATCH] Use poetry (#293) * Add pyproject.toml * Remove setup.cfg and setup.py * Update version lookup * Update workfows to use poetry * Update .readthedocs.yaml for poetry * Update DEVELOPING.rst for poetry * Update pyproject and poetry.lock * Remove url from pyproject.toml * Use poetry for tests * Add default shell for fixing Windows * Remove ixmp4 developing instructions --- .github/workflows/black.yml | 2 +- .github/workflows/build-docs.yml | 18 +- .github/workflows/nightly.yaml | 38 +- .github/workflows/publish.yaml | 59 +- .github/workflows/pytest.yml | 49 +- .readthedocs.yaml | 19 +- DEVELOPING.rst | 53 +- nomenclature/__init__.py | 7 +- poetry.lock | 2606 ++++++++++++++++++++++++++++++ pyproject.toml | 46 + setup.cfg | 44 - setup.py | 3 - 12 files changed, 2822 insertions(+), 122 deletions(-) create mode 100644 poetry.lock create mode 100644 pyproject.toml delete mode 100644 setup.cfg delete mode 100644 setup.py diff --git a/.github/workflows/black.yml b/.github/workflows/black.yml index 7ca5dd3c..568a9d3c 100644 --- a/.github/workflows/black.yml +++ b/.github/workflows/black.yml @@ -6,5 +6,5 @@ jobs: lint: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: psf/black@stable diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index 354fbc23..40d87c61 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -19,12 +19,24 @@ jobs: uses: actions/setup-python@v4 with: python-version: '3.10' - + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + - name: Install poetry dynamic versioning plugin + run: poetry self add "poetry-dynamic-versioning[plugin]" - name: Install Pandoc uses: r-lib/actions/setup-pandoc@v1 - name: Install dependencies and package for building the docs - run: pip install -e .[docs] + run: poetry install --no-interaction --with docs - name: Build the docs - run: make --directory=docs html + run: | + source .venv/bin/activate + make --directory=docs html diff --git a/.github/workflows/nightly.yaml b/.github/workflows/nightly.yaml index 2032584e..1d25fc64 100644 --- a/.github/workflows/nightly.yaml +++ b/.github/workflows/nightly.yaml @@ -21,15 +21,43 @@ jobs: name: py${{ matrix.python-version }} steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - - - name: Install the package - run: pip install --editable .[tests] + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + - name: Install poetry dynamic versioning plugin + run: poetry self add "poetry-dynamic-versioning[plugin]" + # ---------------------------------------------- + # load cached venv if cache exists + #---------------------------------------------- + - name: Load cached venv + id: cached-poetry-dependencies + uses: actions/cache@v2 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install dependencies if cache does not exist + #---------------------------------------------- + - name: Install dependencies + if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: poetry install --no-interaction --no-root --with dev + #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- + - name: Install library + run: poetry install --no-interaction - name: Test with pytest - run: pytest tests + run: poerty run pytest tests diff --git a/.github/workflows/publish.yaml b/.github/workflows/publish.yaml index 83c8e7aa..4294bd0c 100644 --- a/.github/workflows/publish.yaml +++ b/.github/workflows/publish.yaml @@ -14,31 +14,34 @@ jobs: permissions: id-token: write steps: - - uses: actions/checkout@v3 - - name: Set up Python 3.10 - uses: actions/setup-python@v4 - with: - python-version: '3.10' - - name: Install pypa/build - run: >- - python -m - pip install - build - --user - - name: Build a binary wheel and a source tarball - run: >- - python -m - build - --sdist - --wheel - --outdir dist/ - - if: github.event_name != 'release' - name: Publish distribution to Test PyPI - uses: pypa/gh-action-pypi-publish@release/v1 - # Only run for testing - with: - repository-url: https://test.pypi.org/legacy/ - - if: github.event_name == 'release' - name: Publish distribution to PyPI - uses: pypa/gh-action-pypi-publish@release/v1 - # Only run for actual release + #---------------------------------------------- + # check-out repo and set-up python + #---------------------------------------------- + - name: Check out repository + uses: actions/checkout@v3 + - name: Set up python + id: setup-python + uses: actions/setup-python@v4 + with: + python-version: "3.11" + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + - name: Install poetry dynamic versioning plugin + run: poetry self add "poetry-dynamic-versioning[plugin]" + - name: Build package + run: poetry build + - if: github.event_name == 'release' + name: Publish distribution to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + - if: github.event_name != 'release' + name: Publish distribution to Test PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + repository-url: https://test.pypi.org/legacy/ diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 877b6e4e..2d720bab 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -10,33 +10,56 @@ on: branches: [ '**' ] jobs: pytest: - + defaults: + run: + shell: bash strategy: matrix: - os: - - macos - - ubuntu - - windows - python-version: + os: ["macos", "ubuntu", "windows"] # keep consistent with py-version badge in README.md and docs/index.rst - - '3.10' - - '3.11' - + python-version: ["3.10", "3.11"] fail-fast: false runs-on: ${{ matrix.os }}-latest name: ${{ matrix.os }} py${{ matrix.python-version }} steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - - name: Install the package - run: pip install --editable .[tests] + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + #---------------------------------------------- + # load cached venv if cache exists + #---------------------------------------------- + - name: Load cached venv + id: cached-poetry-dependencies + uses: actions/cache@v2 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install dependencies if cache does not exist + #---------------------------------------------- + - name: Install dependencies + if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: poetry install --no-interaction --no-root --with dev + #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- + - name: Install library + run: poetry install --no-interaction - name: Test with pytest - run: pytest tests + run: poetry run pytest tests diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 15b1f0c7..808cba0e 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -10,14 +10,17 @@ build: os: ubuntu-22.04 tools: python: "3.10" - + jobs: + post_create_environment: + # Install poetry + # https://python-poetry.org/docs/#installing-manually + - curl -sSL https://install.python-poetry.org | python - + # Tell poetry to not use a virtual environment + - poetry config virtualenvs.create false + post_install: + # Install dependencies with 'docs' dependency group + # https://python-poetry.org/docs/managing-dependencies/#dependency-groups + - poetry install --with docs # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py - -# Declare the Python requirements -python: - install: - - method: pip - path: . - extra_requirements: [docs] diff --git a/DEVELOPING.rst b/DEVELOPING.rst index f80cff19..4e6c9e4d 100644 --- a/DEVELOPING.rst +++ b/DEVELOPING.rst @@ -1,39 +1,70 @@ +Local development +***************** + +Nomenclature uses poetry for local development. Follow these steps to get setup: + + +```bash +# clone the nomenclature repository +git clone git@github.com:IAMconsortium/nomenclature.git +cd nomenclature + +# Install Poetry, minimum version >=1.2 required +curl -sSL https://install.python-poetry.org | python - + +# You may have to reinitialize your shell at this point. +source ~/.bashrc + +# Activate in-project virtualenvs +poetry config virtualenvs.in-project true + +# Add dynamic versioning plugin +poetry self add "poetry-dynamic-versioning[plugin]" + +# Install dependencies +# (using "--with dev,docs,server" if dev and docs dependencies should be installed as well) +poetry install --with dev,docs + +# Activate virtual environment +poetry shell +``` + Release procedure ***************** -0. Before releasing, check that the "pytest" GitHub action on the current "main" branch +1. Before releasing, check that the "pytest" GitHub action on the current "main" branch passes. Address any failures before releasing. -1. Test on your local machine if the build runs by running ``python -m build --sdist +2. Test on your local machine if the build runs by running ``python -m build --sdist --wheel --outdir dist/``. Fix any packaging issues or errors by creating a PR. -2. Tag the release candidate (RC) version on the main branch as ``vrc`` and push to upstream:: $ git tag vrc> $ git push upstream vrc -3. Check that the GitHub action "Publish to PyPI and TestPyPI" was executed correctly +4. Check that the GitHub action "Publish to PyPI and TestPyPI" was executed correctly and that the release candidate was successfully uploaded to TestPyPI. The address will be https://test.pypi.org/project/nomenclature-iamc/rc/. E.g.: https://test.pypi.org/project/nomenclature-iamc/0.5rc1/ -4. (Optional) Create a fresh virtual environment, download the release from TestPyPi and +5. (Optional) Create a fresh virtual environment, download the release from TestPyPi and check that the install of package has worked correctly:: - + $ pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple nomenclature-iamc==vrc -5. Visit https://github.com/IAMconsortium/nomenclature/releases and mark the new release +6. Visit https://github.com/IAMconsortium/nomenclature/releases and mark the new release by creating the tag and release simultaneously. The name of the tag is v (without the rc). + version> (without the rc). -6. Check that the "Publish to PyPI and TestPyPI" GitHub action passed and that the +7. Check that the "Publish to PyPI and TestPyPI" GitHub action passed and that the distributions are published on https://pypi.org/project/nomenclature-iamc/ . -7. Confirm that the doc pages are updated on +8. Confirm that the doc pages are updated on https://nomenclature-iamc.readthedocs.io/en/stable/: - Both the latest and the stable versions point to the new release - The new release has been added to the list of available versions -8. Confirm that the zenodo entry is updated on https://doi.org/10.5281/zenodo.5930653. +9. Confirm that the zenodo entry is updated on https://doi.org/10.5281/zenodo.5930653. diff --git a/nomenclature/__init__.py b/nomenclature/__init__.py index 7f7224da..d4b695ad 100644 --- a/nomenclature/__init__.py +++ b/nomenclature/__init__.py @@ -3,7 +3,6 @@ from pathlib import Path import yaml -from setuptools_scm import get_version from nomenclature.cli import cli # noqa from nomenclature.codelist import CodeList # noqa @@ -22,11 +21,7 @@ logger = logging.getLogger(__name__) -# get version number either from git (preferred) or metadata -try: - __version__ = get_version(Path(__file__).parents[1]) -except LookupError: - __version__ = version("nomenclature-iamc") +__version__ = version("nomenclature-iamc") def create_yaml_from_xlsx(source, target, sheet_name, col, attrs=None): diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 00000000..7e5a650f --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2606 @@ +# This file is automatically @generated by Poetry 1.5.1 and should not be 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-install_requires = - click >= 8 - pyam-iamc >= 2.0.0 - openpyxl - setuptools >= 41 - pydantic < 2 - pyyaml - setuptools_scm - pandas >= 1.5.2 - numpy - pycountry - gitpython -setup_requires = - setuptools >= 41 - setuptools_scm - -[options.extras_require] -tests = - pytest -docs = - sphinx - sphinx-click - numpydoc - -[options.entry_points] -console_scripts = - nomenclature = nomenclature:cli - -[flake8] -max-line-length = 88 diff --git a/setup.py b/setup.py deleted file mode 100644 index d5d43d7c..00000000 --- a/setup.py +++ /dev/null @@ -1,3 +0,0 @@ -from setuptools import setup - -setup(use_scm_version=True)