- Reference channel is now selected by matching string.
- min_distance can now take values 1 to 10.
- Add support for Zarr files.
- Remove support for TIFF files.
- Support for OpenCV 4.4.
- Automatic normalisation factor.
- Behaviour changed back so all RoIs are now processed in one run.
- Bug fixes.
- Raise error when pipeline fails.
- Add an extra keyword to run the processing in draft mode.
- Add support for big tiff files.
- Add support for non ome-tif files with a directory structure and file naming compatible with histocat.
- Improve validation of configuration keywords.
- The location of input data changes from img_path to input_path.
- IMC slides have now to be processed independently (i.e. input_path is the location of one IMC slide.
- Add contribution guide to documentation.
- Update docstrings and documents.
- Add a keyword that marks intensity correction optional (aic_apply_intensity_correction). by default it is False.
- Add the standard deviation of the Guassian kernel used to convolve the image to do intensity correction (aic_sigma).
- Output an image with detected objects overlayed on top of reference image.
- Move normalize_factor keyword to segmentation group.
- Fix issue with tiff files out of order.
- Updates to configuration file.
- Documentation updates.
- First release.