test.yml

name: "Xanthos Tests"

on:
  push:
    branches:
      - '**'
  pull_request:
    branches:
      - '**'

jobs:
  tests:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.7, 3.8, 3.9, 3.10, 3.11]

    steps:
    - name: Checkout repository
      uses: actions/checkout@v4

    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: Upgrade pip
      run: python -m pip install --upgrade pip

    - name: Install Xanthos
      run: pip install git+https://github.com/JGCRI/xanthos@dev-testing

    - name: Install test dependencies
      run: pip install pytest pytest-cov

    - name: Run tests
      run: pytest --cov=xanthos --cov-report=xml

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        file: ./coverage.xml
        fail_ci_if_error: true