tests.yml

name: Tests

on:
  push:
    branches:
      - main
      - main-release
  pull_request:
  merge_group:
  workflow_dispatch:

env:
  SpringerNatureAPIKey: ${{ secrets.SpringerNatureAPIKey }}
  AstrophysicsDataSystemAPIKey: ${{ secrets.AstrophysicsDataSystemAPIKey }}
  IEEEAPIKey: ${{ secrets.IEEEAPIKey }}
  BiodiversityHeritageApiKey: ${{ secrets.BiodiversityHeritageApiKey}}
  GRADLE_OPTS: -Xmx4g
  JAVA_OPTS: -Xmx4g

concurrency:
  group: "${{ github.workflow }}-${{ github.head_ref || github.ref }}"
  cancel-in-progress: true

permissions:
  pull-requests: write

jobs:
  checkstyle:
    name: Checkstyle
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'true'
          show-progress: 'false'
      - name: Set up JDK
        uses: actions/setup-java@v4
        with:
          java-version: 21.0.1
          distribution: 'liberica'
      - name: Run checkstyle reporter
        uses: nikitasavinov/checkstyle-action@master
        with:
          reporter: github-pr-review
          github_token: ${{ secrets.GITHUB_TOKEN }}
          checkstyle_config: 'config/checkstyle/checkstyle_reviewdog.xml'
          checkstyle_version: '10.3'
      - name: Setup Gradle
        uses: gradle/gradle-build-action@v2
      - name: Run checkstyle using gradle
        run: ./gradlew checkstyleMain checkstyleTest checkstyleJmh
  openrewrite:
    name: OpenRewrite
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'true'
          show-progress: 'false'
      - name: Set up JDK
        uses: actions/setup-java@v4
        with:
          java-version: 21.0.1
          distribution: 'liberica'
      - name: Setup Gradle
        uses: gradle/gradle-build-action@v2
      - name: Run OpenRewrite
        run: |
          ./gradlew rewriteDryRun
  modernizer:
    name: Modernizer
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'true'
          show-progress: 'false'
      - name: Set up JDK
        uses: actions/setup-java@v4
        with:
          java-version: 21.0.1
          distribution: 'liberica'
      - name: Setup Gradle
        uses: gradle/gradle-build-action@v2
      - name: Run modernizer
        run: |
          # enable failing of this task if modernizer complains
          sed -i "s/failOnViolations = false/failOnViolations = true/" build.gradle
          ./gradlew modernizer
  markdown:
    name: Markdown
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'false'
          show-progress: 'false'
      - name: markdownlint-cli2-action
        uses: DavidAnson/markdownlint-cli2-action@v14
        with:
          globs: |
            *.md
            docs/**/*.md
  changelog:
    name: CHANGELOG.md
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'false'
          show-progress: 'false'
      - name: Lint CHANGELOG.md
        run: |
          # Install jbang
          curl -Ls https://sh.jbang.dev | bash -s - app setup
          export PATH=$PATH:$HOME/.jbang/bin

          # run heylogs verification
          jbang com.github.nbbrd.heylogs:heylogs-cli:0.7.2:bin check CHANGELOG.md > heylogs.txt || true

          # improve output
          sed -i 's/all-h2-contain-a-version/all-h2-contain-a-version (ignored)/' heylogs.txt

          cat heylogs.txt

          # exit 1 in case of error
          # We have 1 "valid" issue in CHANGELOG.md
          grep -q "1 problem" heylogs.txt || exit 1
  changelog-unreleased-only:
    name: CHANGELOG.md - only unreleased touched
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'false'
          show-progress: 'false'
          fetch-depth: 0
      - name: Install clparse
        run: |
          curl -LO https://github.com/marcaddeo/clparse/releases/download/0.9.1/clparse-0.9.1-x86_64-unknown-linux-musl.tar.gz
          tar xzvf clparse-0.9.1-x86_64-unknown-linux-musl.tar.gz
          sudo mv clparse /usr/local/bin/clparse
      - name: Check CHANGELOG.md diff
        run: |
          diff \
            <(git show origin/main:CHANGELOG.md | clparse --format=json --separator=– - | jq '.releases[] | select(.version != null)') \
            <(git show HEAD:CHANGELOG.md | clparse --format=json --separator=– - | jq '.releases[] | select(.version != null)')
  tests:
    name: Unit tests
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'true'
          show-progress: 'false'
      - name: Set up JDK
        uses: actions/setup-java@v4
        with:
          java-version: 21.0.1
          distribution: 'liberica'
      - name: Setup Gradle
        uses: gradle/gradle-build-action@v2
      - name: Run tests
        run: xvfb-run --auto-servernum ./gradlew check -x checkstyleJmh -x checkstyleMain -x checkstyleTest -x modernizer
        env:
          CI: "true"
      - name: Format failed test results
        if: failure()
        run: |
          sudo apt-get install -qq -y xml-twig-tools xsltproc
          scripts/after-failure.sh
  databasetests:
    name: Database tests
    runs-on: ubuntu-latest
    services:
      postgres:
        image: postgres:13-alpine
        env:
          POSTGRES_USER: postgres
          POSTGRES_PASSWORD: postgres
          POSTGRES_DB: postgres
        ports:
          - 5432:5432
        # needed because the postgres container does not provide a healthcheck
        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'true'
          show-progress: 'false'
      - name: Set up JDK
        uses: actions/setup-java@v4
        with:
          java-version: 21.0.1
          distribution: 'liberica'
      - name: Setup Gradle
        uses: gradle/gradle-build-action@v2
      - name: Run tests on PostgreSQL
        run: ./gradlew databaseTest --rerun-tasks
        env:
          CI: "true"
          DBMS: "postgresql"
      - name: Shutdown Ubuntu MySQL
        run: sudo service mysql stop # Shutdown the Default MySQL, "sudo" is necessary, please not remove it
      - name: Start custom MySQL
        uses: mirromutth/mysql-action@v1.1
        with:
          host port: 3800
          container port: 3307
          character set server: 'utf8'
          collation server: 'utf8_general_ci'
          mysql version: '8.0'
          mysql database: 'jabref'
          mysql root password: 'root'
      - name: Run tests on MySQL
        run: ./gradlew databaseTest --rerun-tasks
        env:
          CI: "true"
          DBMS: "mysql"
  guitests:
    name: GUI tests
    runs-on: ubuntu-latest
    steps:
      - name: Checkout source
        uses: actions/checkout@v4
        with:
          submodules: 'true'
          show-progress: 'false'
      - name: Set up JDK
        uses: actions/setup-java@v4
        with:
          java-version: 21.0.1
          distribution: 'liberica'
      - name: Setup Gradle
        uses: gradle/gradle-build-action@v2
      - name: Run GUI tests
        run: xvfb-run --auto-servernum ./gradlew guiTest
        env:
          CI: "true"
  codecoverage:
    name: Code coverage
    runs-on: ubuntu-latest
    services:
      postgres:
        image: postgres:10.8
        env:
          POSTGRES_USER: postgres
          POSTGRES_PASSWORD: postgres
          POSTGRES_DB: postgres
        ports:
          - 5432:5432
        # needed because the postgres container does not provide a healthcheck
        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
    steps:
      - name: Check secrets presence
        id: checksecrets
        if: github.ref == 'refs/heads/main'
        shell: bash
        run: |
          if [ "$CODECOV_TOKEN" == "" ]; then
            echo "secretspresent=NO" >> $GITHUB_OUTPUT
          else
            echo "secretspresent=YES" >> $GITHUB_OUTPUT
          fi
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
      - name: Checkout source
        if: github.ref == 'refs/heads/main'
        uses: actions/checkout@v4
        with:
          submodules: 'true'
          show-progress: 'false'
      - name: Set up JDK
        if: github.ref == 'refs/heads/main'
        uses: actions/setup-java@v4
        with:
          java-version: 21.0.1
          distribution: 'liberica'
      - name: Setup Gradle
        uses: gradle/gradle-build-action@v2
      - name: Update test coverage metrics
        if: (github.ref == 'refs/heads/main') && (steps.checksecrets.outputs.secretspresent == 'YES')
        run: xvfb-run --auto-servernum ./gradlew jacocoTestReport
        env:
          CI: "true"
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
          DBMS: "postgresql"
      - uses: codecov/codecov-action@v3
        if: (github.ref == 'refs/heads/main') && (steps.checksecrets.outputs.secretspresent == 'YES')
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
  # This is https://github.com/marketplace/actions/gradle-wrapper-validation
  # It ensures that the jar file is from gradle and not by a strange third party.
  gradlevalidation:
    name: "Validate Gradle Wrapper"
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          show-progress: 'false'
      - uses: gradle/wrapper-validation-action@v1
  # This ensures that no git merge conflict markers (<<<, ...) are contained
  merge_conflict_job:
    name: Find merge conflicts
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          show-progress: 'false'
      - name: Merge Conflict finder
        uses: olivernybroe/action-conflict-finder@v4.0