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BayesNets_0.5.log
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BayesNets_0.5.log
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>>> 'Pkg.add("BayesNets")' log
INFO: Cloning cache of BayesNets from https://github.com/sisl/BayesNets.jl.git
INFO: Cloning cache of Discretizers from https://github.com/sisl/Discretizers.jl.git
INFO: Cloning cache of TikzGraphs from https://github.com/sisl/TikzGraphs.jl.git
INFO: Cloning cache of TikzPictures from https://github.com/sisl/TikzPictures.jl.git
INFO: Installing AutoHashEquals v0.0.10
INFO: Installing BayesNets v1.0.5
INFO: Installing BinDeps v0.4.5
INFO: Installing Blosc v0.1.7
INFO: Installing Calculus v0.1.15
INFO: Installing CategoricalArrays v0.0.6
INFO: Installing DataArrays v0.3.9
INFO: Installing DataFrames v0.9.0
INFO: Installing Discretizers v0.3.1
INFO: Installing Distributions v0.11.0
INFO: Installing FileIO v0.2.0
INFO: Installing GZip v0.2.20
INFO: Installing HDF5 v0.6.6
INFO: Installing Iterators v0.2.0
INFO: Installing JLD v0.6.4
INFO: Installing LaTeXStrings v0.2.0
INFO: Installing LegacyStrings v0.1.1
INFO: Installing LightGraphs v0.7.1
INFO: Installing LightXML v0.4.0
INFO: Installing NullableArrays v0.0.10
INFO: Installing PDMats v0.5.0
INFO: Installing ParserCombinator v1.7.11
INFO: Installing Reexport v0.0.3
INFO: Installing Rmath v0.1.3
INFO: Installing SHA v0.2.1
INFO: Installing SortingAlgorithms v0.1.0
INFO: Installing StatsBase v0.11.1
INFO: Installing StatsFuns v0.3.1
INFO: Installing TikzGraphs v0.2.0
INFO: Installing TikzPictures v0.3.5
INFO: Installing URIParser v0.1.6
INFO: Building Rmath
INFO: Building Blosc
INFO: Building HDF5
INFO: Building LightXML
INFO: Package database updated
>>> 'Pkg.test("BayesNets")' log
Julia Version 0.5.0
Commit 3c9d753 (2016-09-19 18:14 UTC)
Platform Info:
System: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) CPU E3-1241 v3 @ 3.50GHz
WORD_SIZE: 64
Ubuntu 14.04.5 LTS
uname: Linux 3.13.0-98-generic #145-Ubuntu SMP Sat Oct 8 20:13:07 UTC 2016 x86_64 x86_64
Memory: 2.939289093017578 GB (833.5390625 MB free)
Uptime: 5473.0 sec
Load Avg: 1.00927734375 1.01220703125 0.970703125
Intel(R) Xeon(R) CPU E3-1241 v3 @ 3.50GHz:
speed user nice sys idle irq
#1 3500 MHz 226758 s 66 s 32932 s 234630 s 3 s
#2 3500 MHz 128640 s 98 s 20102 s 380825 s 0 s
BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Nehalem)
LAPACK: libopenblas64_
LIBM: libopenlibm
LLVM: libLLVM-3.7.1 (ORCJIT, haswell)
Environment:
TERM = vt100
LD_LIBRARY_PATH = :/usr/local/lib/
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/vagrant/julia/bin/
JAVA_HOME = /usr/lib/jvm/java-7-oracle
HOME = /home/vagrant
Package Directory: /home/vagrant/.julia/v0.5
2 required packages:
- BayesNets 1.0.5
- JSON 0.8.0
31 additional packages:
- AutoHashEquals 0.0.10
- BinDeps 0.4.5
- Blosc 0.1.7
- Calculus 0.1.15
- CategoricalArrays 0.0.6
- Compat 0.9.2
- DataArrays 0.3.9
- DataFrames 0.9.0
- Discretizers 0.3.1
- Distributions 0.11.0
- FileIO 0.2.0
- GZip 0.2.20
- HDF5 0.6.6
- Iterators 0.2.0
- JLD 0.6.4
- LaTeXStrings 0.2.0
- LegacyStrings 0.1.1
- LightGraphs 0.7.1
- LightXML 0.4.0
- NullableArrays 0.0.10
- PDMats 0.5.0
- ParserCombinator 1.7.11
- Reexport 0.0.3
- Rmath 0.1.3
- SHA 0.2.1
- SortingAlgorithms 0.1.0
- StatsBase 0.11.1
- StatsFuns 0.3.1
- TikzGraphs 0.2.0
- TikzPictures 0.3.5
- URIParser 0.1.6
INFO: Computing test dependencies for BayesNets...
INFO: Cloning cache of NBInclude from https://github.com/stevengj/NBInclude.jl.git
INFO: Cloning cache of RData from https://github.com/JuliaStats/RData.jl.git
INFO: Cloning cache of RDatasets from https://github.com/johnmyleswhite/RDatasets.jl.git
INFO: Installing NBInclude v1.0.1
INFO: Installing RData v0.0.4
INFO: Installing RDatasets v0.2.0
INFO: Testing BayesNets
ERROR: LoadError: LoadError: suffstats is not implemented for (Distributions.Normal{T<:Real},NullableArrays.NullableArray{Float64,1}).
in suffstats(::Type{Distributions.Normal}, ::NullableArrays.NullableArray{Float64,1}) at /home/vagrant/.julia/v0.5/Distributions/src/genericfit.jl:5
in fit_mle(::Type{Distributions.Normal}, ::NullableArrays.NullableArray{Float64,1}) at /home/vagrant/.julia/v0.5/Distributions/src/genericfit.jl:8
in fit at /home/vagrant/.julia/v0.5/BayesNets/src/CPDs/static_cpd.jl:27 [inlined] (repeats 2 times)
in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
in process_options(::Base.JLOptions) at ./client.jl:262
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/BayesNets/test/test_cpds.jl, in expression starting on line 4
while loading /home/vagrant/.julia/v0.5/BayesNets/test/runtests.jl, in expression starting on line 33
==============================[ ERROR: BayesNets ]==============================
failed process: Process(`/home/vagrant/julia/bin/julia -Cx86-64 -J/home/vagrant/julia/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=no --compilecache=yes /home/vagrant/.julia/v0.5/BayesNets/test/runtests.jl`, ProcessExited(1)) [1]
================================================================================
INFO: Removing NBInclude v1.0.1
INFO: Removing RData v0.0.4
INFO: Removing RDatasets v0.2.0
ERROR: BayesNets had test errors
in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:740
in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./<missing>:0
in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31
in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59
in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31
in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./<missing>:0
in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
in eval(::Module, ::Any) at ./boot.jl:234
in process_options(::Base.JLOptions) at ./client.jl:239
in _start() at ./client.jl:318
>>> End of log