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Vega_0.5.log
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Vega_0.5.log
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>>> 'Pkg.add("Vega")' log
INFO: Cloning cache of Vega from https://github.com/johnmyleswhite/Vega.jl.git
INFO: Installing AxisAlgorithms v0.1.5
INFO: Installing Benchmark v0.1.0
INFO: Installing BinDeps v0.4.5
INFO: Installing Calculus v0.1.15
INFO: Installing CategoricalArrays v0.0.6
INFO: Installing ColorBrewer v0.3.0
INFO: Installing ColorTypes v0.2.12
INFO: Installing Colors v0.6.9
INFO: Installing DataArrays v0.3.9
INFO: Installing DataFrames v0.9.0
INFO: Installing Distributions v0.11.0
INFO: Installing FileIO v0.2.0
INFO: Installing FixedPointNumbers v0.2.1
INFO: Installing ForwardDiff v0.2.5
INFO: Installing FunctionalCollections v0.2.0
INFO: Installing GZip v0.2.20
INFO: Installing Interpolations v0.3.6
INFO: Installing KernelDensity v0.3.0
INFO: Installing NaNMath v0.2.1
INFO: Installing NoveltyColors v0.3.0
INFO: Installing NullableArrays v0.0.10
INFO: Installing Optim v0.6.1
INFO: Installing PDMats v0.5.0
INFO: Installing Patchwork v0.3.0
INFO: Installing PositiveFactorizations v0.0.2
INFO: Installing Ratios v0.0.4
INFO: Installing Reexport v0.0.3
INFO: Installing Rmath v0.1.3
INFO: Installing SHA v0.2.1
INFO: Installing SortingAlgorithms v0.1.0
INFO: Installing StatsBase v0.11.1
INFO: Installing StatsFuns v0.3.1
INFO: Installing URIParser v0.1.6
INFO: Installing Vega v0.6.8
INFO: Installing WoodburyMatrices v0.2.0
INFO: Building Rmath
INFO: Package database updated
>>> 'Pkg.test("Vega")' log
Julia Version 0.5.0
Commit 3c9d753 (2016-09-19 18:14 UTC)
Platform Info:
System: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) CPU E3-1241 v3 @ 3.50GHz
WORD_SIZE: 64
Ubuntu 14.04.5 LTS
uname: Linux 3.13.0-98-generic #145-Ubuntu SMP Sat Oct 8 20:13:07 UTC 2016 x86_64 x86_64
Memory: 2.939289093017578 GB (393.234375 MB free)
Uptime: 26653.0 sec
Load Avg: 1.05322265625 1.001953125 0.99560546875
Intel(R) Xeon(R) CPU E3-1241 v3 @ 3.50GHz:
speed user nice sys idle irq
#1 3499 MHz 1563750 s 91 s 238998 s 560643 s 24 s
#2 3499 MHz 392680 s 49 s 77622 s 2136782 s 0 s
BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Nehalem)
LAPACK: libopenblas64_
LIBM: libopenlibm
LLVM: libLLVM-3.7.1 (ORCJIT, haswell)
Environment:
TERM = vt100
LD_LIBRARY_PATH = :/usr/local/lib/
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/vagrant/julia/bin/
JAVA_HOME = /usr/lib/jvm/java-7-oracle
HOME = /home/vagrant
Package Directory: /home/vagrant/.julia/v0.5
2 required packages:
- JSON 0.8.0
- Vega 0.6.8
35 additional packages:
- AxisAlgorithms 0.1.5
- Benchmark 0.1.0
- BinDeps 0.4.5
- Calculus 0.1.15
- CategoricalArrays 0.0.6
- ColorBrewer 0.3.0
- ColorTypes 0.2.12
- Colors 0.6.9
- Compat 0.9.2
- DataArrays 0.3.9
- DataFrames 0.9.0
- Distributions 0.11.0
- FileIO 0.2.0
- FixedPointNumbers 0.2.1
- ForwardDiff 0.2.5
- FunctionalCollections 0.2.0
- GZip 0.2.20
- Interpolations 0.3.6
- KernelDensity 0.3.0
- NaNMath 0.2.1
- NoveltyColors 0.3.0
- NullableArrays 0.0.10
- Optim 0.6.1
- PDMats 0.5.0
- Patchwork 0.3.0
- PositiveFactorizations 0.0.2
- Ratios 0.0.4
- Reexport 0.0.3
- Rmath 0.1.3
- SHA 0.2.1
- SortingAlgorithms 0.1.0
- StatsBase 0.11.1
- StatsFuns 0.3.1
- URIParser 0.1.6
- WoodburyMatrices 0.2.0
INFO: Computing test dependencies for Vega...
INFO: Installing RData v0.0.4
INFO: Installing RDatasets v0.2.0
INFO: Testing Vega
WARNING: deprecated syntax "call(::Type{T}, ...)".
Use "(::Type{T})(...)" instead.
WARNING: deprecated syntax "call(::Core.kwftype(Type{T}), ...)".
Use "(::Core.kwftype(Type{T}))(...)" instead.
WARNING: Method definition (::Type{Vega.VegaScene})(Any, Any, Any, Any, Any, Any, Any) in module Vega overwritten.
WARNING: `@osx_only` is deprecated, use `@static if is_apple()` instead
in depwarn(::String, ::Symbol) at ./deprecated.jl:64
in @osx_only(::Any) at ./deprecated.jl:496
in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
in macro expansion; at ./none:2 [inlined]
in anonymous at ./<missing>:?
in eval(::Module, ::Any) at ./boot.jl:234
in process_options(::Base.JLOptions) at ./client.jl:239
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/src/render.jl, in expression starting on line 2
WARNING: Base.writemime is deprecated.
likely near /home/vagrant/.julia/v0.5/Vega/src/render.jl:13
WARNING: Base.writemime is deprecated.
likely near /home/vagrant/.julia/v0.5/Vega/src/render.jl:13
WARNING: Base.writemime is deprecated.
likely near /home/vagrant/.julia/v0.5/Vega/src/render.jl:39
WARNING: Method definition show(IO, Base.Multimedia.MIME{:text/html}, Vega.VegaVisualization) in module Vega at /home/vagrant/.julia/v0.5/Vega/src/render.jl:14 overwritten at /home/vagrant/.julia/v0.5/Vega/src/render.jl:40.
WARNING: Base.writemime is deprecated.
likely near /home/vagrant/.julia/v0.5/Vega/src/render.jl:39
WARNING: symbol is deprecated, use Symbol instead.
in depwarn(::String, ::Symbol) at ./deprecated.jl:64
in symbol(::String, ::Vararg{String,N}) at ./deprecated.jl:30
in macro expansion; at /home/vagrant/.julia/v0.5/Vega/src/intermediates/xlab_ylab.jl:5 [inlined]
in anonymous at ./<missing>:?
in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
in macro expansion; at ./none:2 [inlined]
in anonymous at ./<missing>:?
in eval(::Module, ::Any) at ./boot.jl:234
in process_options(::Base.JLOptions) at ./client.jl:239
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/src/intermediates/xlab_ylab.jl, in expression starting on line 3
WARNING: symbol is deprecated, use Symbol instead.
in depwarn(::String, ::Symbol) at ./deprecated.jl:64
in symbol(::String, ::Vararg{String,N}) at ./deprecated.jl:30
in macro expansion; at /home/vagrant/.julia/v0.5/Vega/src/intermediates/xlim_ylim.jl:5 [inlined]
in anonymous at ./<missing>:?
in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
in macro expansion; at ./none:2 [inlined]
in anonymous at ./<missing>:?
in eval(::Module, ::Any) at ./boot.jl:234
in process_options(::Base.JLOptions) at ./client.jl:239
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/src/intermediates/xlim_ylim.jl, in expression starting on line 3
WARNING: readall is deprecated, use readstring instead.
in depwarn(::String, ::Symbol) at ./deprecated.jl:64
in readall(::String) at ./deprecated.jl:30
in include_from_node1(::String) at ./loading.jl:488
in process_options(::Base.JLOptions) at ./client.jl:262
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/test/runtests.jl, in expression starting on line 4
Test 1
Test 2
Test 3
Test 4
Test 5
Test 6
Test 7
Test 8
Test 9
Test 10
Test 11
Test 12
Test 13
Test 14
Test 15
WARNING: Base.UTF8String is deprecated, use String instead.
likely near /home/vagrant/.julia/v0.5/Vega/test/runtests.jl:146
WARNING: Base.UTF8String is deprecated, use String instead.
likely near /home/vagrant/.julia/v0.5/Vega/test/runtests.jl:146
WARNING: Base.UTF8String is deprecated, use String instead.
likely near /home/vagrant/.julia/v0.5/Vega/test/runtests.jl:146
WARNING: Base.UTF8String is deprecated, use String instead.
likely near /home/vagrant/.julia/v0.5/Vega/test/runtests.jl:146
Test 16
Test 17
WARNING: histrange(...) is deprecated, use StatsBase.histrange(...) instead
in depwarn(::String, ::Symbol) at ./deprecated.jl:64
in histrange(::Array{Float64,1}, ::Int64) at ./deprecated.jl:551
in hist at ./deprecated.jl:645 [inlined]
in #histogram#69(::Array{Float64,1}, ::Bool, ::Bool, ::Int64, ::Float64, ::Function) at /home/vagrant/.julia/v0.5/Vega/src/derived/histogram.jl:8
in (::Vega.#kw##histogram)(::Array{Any,1}, ::Vega.#histogram) at ./<missing>:0
in include_from_node1(::String) at ./loading.jl:488
in process_options(::Base.JLOptions) at ./client.jl:262
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/test/runtests.jl, in expression starting on line 174
WARNING: hist(...) and hist!(...) are deprecated. Use fit(Histogram,...) in StatsBase.jl instead.
in depwarn(::String, ::Symbol) at ./deprecated.jl:64
in #hist!#994(::Bool, ::Function, ::Array{Int64,1}, ::Array{Float64,1}, ::FloatRange{Float64}) at ./deprecated.jl:629
in #histogram#69(::Array{Float64,1}, ::Bool, ::Bool, ::Int64, ::Float64, ::Function) at /home/vagrant/.julia/v0.5/Vega/src/derived/histogram.jl:8
in (::Vega.#kw##histogram)(::Array{Any,1}, ::Vega.#histogram) at ./<missing>:0
in include_from_node1(::String) at ./loading.jl:488
in process_options(::Base.JLOptions) at ./client.jl:262
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/test/runtests.jl, in expression starting on line 174
Test 18
WARNING: hist(...) and hist!(...) are deprecated. Use fit(Histogram,...) in StatsBase.jl instead.
in depwarn(::String, ::Symbol) at ./deprecated.jl:64
in #hist!#994(::Bool, ::Function, ::Array{Int64,1}, ::Array{Float64,1}, ::FloatRange{Float64}) at ./deprecated.jl:629
in #histogram#69(::Array{Float64,1}, ::Bool, ::Bool, ::Int64, ::Float64, ::Function) at /home/vagrant/.julia/v0.5/Vega/src/derived/histogram.jl:8
in (::Vega.#kw##histogram)(::Array{Any,1}, ::Vega.#histogram) at ./<missing>:0
in include_from_node1(::String) at ./loading.jl:488
in process_options(::Base.JLOptions) at ./client.jl:262
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/test/runtests.jl, in expression starting on line 182
Test 19
ERROR: LoadError: MethodError: no method matching kde(::Tuple{NullableArrays.NullableArray{Float64,1},NullableArrays.NullableArray{Int64,1}})
Closest candidates are:
kde(!Matched::AbstractArray{T<:Real,1}; npoints, bandwidth, kernel, boundary) at /home/vagrant/.julia/v0.5/KernelDensity/src/univariate.jl:143
kde(!Matched::AbstractArray{T<:Real,1}, !Matched::Range{T}; bandwidth, kernel) at /home/vagrant/.julia/v0.5/KernelDensity/src/univariate.jl:136
kde(!Matched::AbstractArray{T<:Real,1}, !Matched::Range{T}, !Matched::Distributions.Distribution{Distributions.Univariate,S<:Distributions.ValueSupport}) at /home/vagrant/.julia/v0.5/KernelDensity/src/univariate.jl:123
...
in #jointplot#100(::NullableArrays.NullableArray{Float64,1}, ::NullableArrays.NullableArray{Int64,1}, ::Int64, ::Function) at /home/vagrant/.julia/v0.5/Vega/src/derived/jointplot.jl:4
in (::Vega.#kw##jointplot)(::Array{Any,1}, ::Vega.#jointplot) at ./<missing>:0
in include_from_node1(::String) at ./loading.jl:488
in process_options(::Base.JLOptions) at ./client.jl:262
in _start() at ./client.jl:318
while loading /home/vagrant/.julia/v0.5/Vega/test/runtests.jl, in expression starting on line 190
================================[ ERROR: Vega ]=================================
failed process: Process(`/home/vagrant/julia/bin/julia -Cx86-64 -J/home/vagrant/julia/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=no --compilecache=yes /home/vagrant/.julia/v0.5/Vega/test/runtests.jl`, ProcessExited(1)) [1]
================================================================================
INFO: Removing RData v0.0.4
INFO: Removing RDatasets v0.2.0
ERROR: Vega had test errors
in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:740
in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./<missing>:0
in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31
in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59
in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31
in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./<missing>:0
in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
in eval(::Module, ::Any) at ./boot.jl:234
in process_options(::Base.JLOptions) at ./client.jl:239
in _start() at ./client.jl:318
>>> End of log