Openblas woes on OS X 10.8.4

[cmmp]

I'm trying to compile julia from source. Git log says I have 81308ebed9100d749c423db0cf03a24cf6288a03 as the latest commit.

When I try to build with make, I get:

Undefined symbols for architecture x86_64:
  "__gfortran_compare_string", referenced from:
      _ilaenv_ in libopenblas_sandybridgep-r0.2.6.a(ilaenv.o)
  "__gfortran_concat_string", referenced from:
      _sgesvd_ in libopenblas_sandybridgep-r0.2.6.a(sgesvd.o)
      _shseqr_ in libopenblas_sandybridgep-r0.2.6.a(shseqr.o)
      _sormbr_ in libopenblas_sandybridgep-r0.2.6.a(sormbr.o)
      _sormhr_ in libopenblas_sandybridgep-r0.2.6.a(sormhr.o)
      _sormlq_ in libopenblas_sandybridgep-r0.2.6.a(sormlq.o)
      _sormql_ in libopenblas_sandybridgep-r0.2.6.a(sormql.o)
      _sormqr_ in libopenblas_sandybridgep-r0.2.6.a(sormqr.o)
      ...
  "__gfortran_pow_i8_i8", referenced from:
      _slalsa_ in libopenblas_sandybridgep-r0.2.6.a(slalsa.o)
      _dlalsa_ in libopenblas_sandybridgep-r0.2.6.a(dlalsa.o)
      _claed0_ in libopenblas_sandybridgep-r0.2.6.a(claed0.o)
      _claed7_ in libopenblas_sandybridgep-r0.2.6.a(claed7.o)
      _clalsa_ in libopenblas_sandybridgep-r0.2.6.a(clalsa.o)
      _cstedc_ in libopenblas_sandybridgep-r0.2.6.a(cstedc.o)
      _zlaed0_ in libopenblas_sandybridgep-r0.2.6.a(zlaed0.o)
      ...
  "__gfortran_pow_r4_i8", referenced from:
      _sggbal_ in libopenblas_sandybridgep-r0.2.6.a(sggbal.o)
      _sgeequb_ in libopenblas_sandybridgep-r0.2.6.a(sgeequb.o)
      _ssyequb_ in libopenblas_sandybridgep-r0.2.6.a(ssyequb.o)
      _spoequb_ in libopenblas_sandybridgep-r0.2.6.a(spoequb.o)
      _sgbequb_ in libopenblas_sandybridgep-r0.2.6.a(sgbequb.o)
      _cggbal_ in libopenblas_sandybridgep-r0.2.6.a(cggbal.o)
      _clargv_ in libopenblas_sandybridgep-r0.2.6.a(clargv.o)
      ...
  "__gfortran_pow_r8_i8", referenced from:
      _dggbal_ in libopenblas_sandybridgep-r0.2.6.a(dggbal.o)
      _dgeequb_ in libopenblas_sandybridgep-r0.2.6.a(dgeequb.o)
      _dsyequb_ in libopenblas_sandybridgep-r0.2.6.a(dsyequb.o)
      _dpoequb_ in libopenblas_sandybridgep-r0.2.6.a(dpoequb.o)
      _dgbequb_ in libopenblas_sandybridgep-r0.2.6.a(dgbequb.o)
      _zggbal_ in libopenblas_sandybridgep-r0.2.6.a(zggbal.o)
      _zlargv_ in libopenblas_sandybridgep-r0.2.6.a(zlargv.o)
      ...
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [libopenblas_sandybridgep-r0.2.6.dylib] Error 1
make[3]: *** [shared] Error 2
*** Clean the OpenBLAS build with 'make -C deps clean-openblas'. Rebuild with 'make OPENBLAS_USE_THREAD=0 if OpenBLAS had trouble linking libpthread.so, and with 'make OPENBLAS_TARGET_ARCH=NEHALEM' if there were errors building SandyBridge support. Both these options can also be used simultaneously. ***
cp: openblas-v0.2.6/libopenblas.dylib: No such file or directory
make[2]: *** [/Users/cassio/julia/usr/lib/libopenblas.dylib] Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
Cassios-MacBook-Pro:julia cassio$

following the suggestions and trying make OPENBLAS_TARGET_ARCH=NEHALEM after running make -C deps clean-openblas I get:

Undefined symbols for architecture x86_64:
  "__gfortran_compare_string", referenced from:
      _ilaenv_ in libopenblas_nehalemp-r0.2.6.a(ilaenv.o)
  "__gfortran_concat_string", referenced from:
      _sgesvd_ in libopenblas_nehalemp-r0.2.6.a(sgesvd.o)
      _shseqr_ in libopenblas_nehalemp-r0.2.6.a(shseqr.o)
      _sormbr_ in libopenblas_nehalemp-r0.2.6.a(sormbr.o)
      _sormhr_ in libopenblas_nehalemp-r0.2.6.a(sormhr.o)
      _sormlq_ in libopenblas_nehalemp-r0.2.6.a(sormlq.o)
      _sormql_ in libopenblas_nehalemp-r0.2.6.a(sormql.o)
      _sormqr_ in libopenblas_nehalemp-r0.2.6.a(sormqr.o)
      ...
  "__gfortran_pow_i8_i8", referenced from:
      _slalsa_ in libopenblas_nehalemp-r0.2.6.a(slalsa.o)
      _dlalsa_ in libopenblas_nehalemp-r0.2.6.a(dlalsa.o)
      _claed0_ in libopenblas_nehalemp-r0.2.6.a(claed0.o)
      _claed7_ in libopenblas_nehalemp-r0.2.6.a(claed7.o)
      _clalsa_ in libopenblas_nehalemp-r0.2.6.a(clalsa.o)
      _cstedc_ in libopenblas_nehalemp-r0.2.6.a(cstedc.o)
      _zlaed0_ in libopenblas_nehalemp-r0.2.6.a(zlaed0.o)
      ...
  "__gfortran_pow_r4_i8", referenced from:
      _sggbal_ in libopenblas_nehalemp-r0.2.6.a(sggbal.o)
      _sgeequb_ in libopenblas_nehalemp-r0.2.6.a(sgeequb.o)
      _ssyequb_ in libopenblas_nehalemp-r0.2.6.a(ssyequb.o)
      _spoequb_ in libopenblas_nehalemp-r0.2.6.a(spoequb.o)
      _sgbequb_ in libopenblas_nehalemp-r0.2.6.a(sgbequb.o)
      _cggbal_ in libopenblas_nehalemp-r0.2.6.a(cggbal.o)
      _clargv_ in libopenblas_nehalemp-r0.2.6.a(clargv.o)
      ...
  "__gfortran_pow_r8_i8", referenced from:
      _dggbal_ in libopenblas_nehalemp-r0.2.6.a(dggbal.o)
      _dgeequb_ in libopenblas_nehalemp-r0.2.6.a(dgeequb.o)
      _dsyequb_ in libopenblas_nehalemp-r0.2.6.a(dsyequb.o)
      _dpoequb_ in libopenblas_nehalemp-r0.2.6.a(dpoequb.o)
      _dgbequb_ in libopenblas_nehalemp-r0.2.6.a(dgbequb.o)
      _zggbal_ in libopenblas_nehalemp-r0.2.6.a(zggbal.o)
      _zlargv_ in libopenblas_nehalemp-r0.2.6.a(zlargv.o)
      ...
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [libopenblas_nehalemp-r0.2.6.dylib] Error 1
make[3]: *** [shared] Error 2
*** Clean the OpenBLAS build with 'make -C deps clean-openblas'. Rebuild with 'make OPENBLAS_USE_THREAD=0 if OpenBLAS had trouble linking libpthread.so, and with 'make OPENBLAS_TARGET_ARCH=NEHALEM' if there were errors building SandyBridge support. Both these options can also be used simultaneously. ***
cp: openblas-v0.2.6/libopenblas.dylib: No such file or directory
make[2]: *** [/Users/cassio/julia/usr/lib/libopenblas.dylib] Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2

I have gfortran installed from homebew:

Cassios-MacBook-Pro:~ cassio$ brew info gfortran
gfortran: stable 4.8.1 (bottled)
http://gcc.gnu.org/wiki/GFortran
/usr/local/Cellar/gfortran/4.7.2 (289 files, 59M)
/usr/local/Cellar/gfortran/4.8.0 (1025 files, 115M)
  Poured from bottle
/usr/local/Cellar/gfortran/4.8.1 (1025 files, 119M) *
  Poured from bottle
From: https://github.com/mxcl/homebrew/commits/master/Library/Formula/gfortran.rb
==> Dependencies
Required: gmp, libmpc, mpfr, cloog, isl
==> Options
--check
    Run the make check fortran. This is for maintainers.
--enable-profiled-build
    Make use of profile guided optimization when bootstrapping GCC
==> Caveats
Brews that require a Fortran compiler should use:
  depends_on :fortran

Any ideas of what I could do?

[randyzwitch]

I have the same/similar problem on OSX 10.8.4. None of the make suggestions work.

ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [libopenblas_nehalemp-r0.2.6.dylib] Error 1
make[3]: *** [shared] Error 2
*** Clean the OpenBLAS build with 'make -C deps clean-openblas'. Rebuild with 'make OPENBLAS_USE_THREAD=0 if OpenBLAS had trouble linking libpthread.so, and with 'make OPENBLAS_TARGET_ARCH=NEHALEM' if there were errors building SandyBridge support. Both these options can also be used simultaneously. ***
cp: openblas-v0.2.6/libopenblas.dylib: No such file or directory
make[2]: *** [/Users/randyzwitch/julia/usr/lib/libopenblas.dylib] Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2

[xianyi]

It seems like missing x86_64 libgfortran.a

[cmmp]

Thanks Mike, that solved the issue.