diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml index 6394d1e..c013b16 100644 --- a/.github/workflows/docs.yaml +++ b/.github/workflows/docs.yaml @@ -3,6 +3,9 @@ on: push: branches: - master + pull_request: + branches: + - master concurrency: group: "${{ github.ref }}-${{ github.head_ref }}" @@ -18,44 +21,34 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 with: - fetch-depth: 0 - + fetch-depth: 0 + - name: setup_miniconda uses: conda-incubator/setup-miniconda@v2 with: - python-version: 3.9 + python-version: 3.11 + environment-file: ci/environment.yaml auto-update-conda: true channel-priority: flexible channels: conda-forge - add-pip-as-python-dependency: true - mamba-version: "*" - - - name: install package deps - run: | - mamba install numpy scipy pytest pytest-cov codecov sphinx - pip install sphinx-sitemap sphinx-rtd-theme - - - name: check install - run: | - which python - which pip - conda info - conda list - + miniforge-variant: Mambaforge + use-mamba: true + - name: install package run: | pip install -v . - name: build docs run: | - python setup.py build_sphinx + cd doc && sphinx-build -b html source build - name: deploy docs uses: peaceiris/actions-gh-pages@v3 + if: github.event_name != 'pull_request' with: github_token: ${{ secrets.GITHUB_TOKEN }} - publish_dir: ./build/sphinx/html + publish_dir: ./doc/build user_name: 'github-actions' user_email: 'github-action@users.noreply.github.com' diff --git a/ci/environment.yaml b/ci/environment.yaml index 9a3355f..5e29a52 100644 --- a/ci/environment.yaml +++ b/ci/environment.yaml @@ -10,4 +10,4 @@ dependencies: # documentation - mdanalysis-sphinx-theme >=1.0.1 - pip: - - sphinx_sitemap \ No newline at end of file + - sphinx-sitemap \ No newline at end of file diff --git a/ci/requirements.txt b/ci/requirements.txt index 2bbd2a1..39273b6 100644 --- a/ci/requirements.txt +++ b/ci/requirements.txt @@ -1,3 +1,5 @@ numpy scipy +mrcfile +mdanalysis-sphinx-theme >=1.0.1 sphinx-sitemap