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<!doctype html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Table of Contents — MIRTK</title>
<link rel="stylesheet" href="_static/bizstyle.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT: './',
VERSION: 'v2.0 (8c2aa10)',
COLLAPSE_INDEX: false,
FILE_SUFFIX: '.html',
HAS_SOURCE: true
};
</script>
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<link rel="top" title="MIRTK" href="#" />
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</head>
<body role="document">
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
<a href="index.html" title="Medical Image Registration ToolKit (MIRTK)"
accesskey="N">next</a></li>
<li class="nav-item nav-item-0"><a href="#">MIRTK</a> »</li>
</ul>
</div>
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
<div class="sphinxsidebarwrapper">
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
<form class="search" action="search.html" method="get">
<input type="text" name="q" />
<input type="submit" value="Go" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
<h3><a href="#">Table Of Contents</a></h3>
<ul>
<li class="toctree-l1"><a class="reference internal" href="index.html">Overview</a></li>
<li class="toctree-l1"><a class="reference internal" href="getstarted.html">Get Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="commands.html">Applications</a></li>
<li class="toctree-l1"><a class="reference internal" href="modules.html">Modules</a></li>
<li class="toctree-l1"><a class="reference internal" href="apidoc.html">Reference</a></li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="changelog.html">News</a></li>
<li class="toctree-l1"><a class="reference internal" href="download.html">Download</a></li>
<li class="toctree-l1"><a class="reference internal" href="install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="help.html">Support</a></li>
<li class="toctree-l1"><a class="reference internal" href="publications.html">Publications</a></li>
<li class="toctree-l1"><a class="reference internal" href="people.html">People</a></li>
</ul>
</div>
</div>
<div class="document">
<div class="documentwrapper">
<div class="bodywrapper">
<div class="body" role="main">
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="index.html">Overview</a><ul>
<li class="toctree-l2"><a class="reference internal" href="index.html#modules">Modules</a></li>
<li class="toctree-l2"><a class="reference internal" href="index.html#commands">Commands</a></li>
<li class="toctree-l2"><a class="reference internal" href="index.html#background">Background</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="getstarted.html">Get Started</a><ul>
<li class="toctree-l2"><a class="reference internal" href="getstarted.html#install-the-software">Install the software</a></li>
<li class="toctree-l2"><a class="reference internal" href="getstarted.html#enable-bash-completion">Enable Bash completion</a></li>
<li class="toctree-l2"><a class="reference internal" href="getstarted.html#run-the-commands">Run the commands</a></li>
<li class="toctree-l2"><a class="reference internal" href="getstarted.html#write-your-own-application">Write your own application</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="commands.html">Applications</a><ul>
<li class="toctree-l2"><a class="reference internal" href="commands.html#commands">Commands</a></li>
<li class="toctree-l2"><a class="reference internal" href="commands.html#options">Options</a><ul>
<li class="toctree-l3"><a class="reference internal" href="commands.html#standard-options">Standard options</a></li>
<li class="toctree-l3"><a class="reference internal" href="commands.html#terminal-options">Terminal options</a></li>
<li class="toctree-l3"><a class="reference internal" href="commands.html#parallelization-options">Parallelization options</a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="modules.html">Modules</a><ul>
<li class="toctree-l2"><a class="reference internal" href="modules.html#core-modules">Core Modules</a><ul>
<li class="toctree-l3"><a class="reference internal" href="modules.html#common">Common</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#numerics">Numerics</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#image">Image</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#i-o">I/O</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#point-set">Point Set</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#transformation">Transformation</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#registration">Registration</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="modules.html#external-packages">External Packages</a><ul>
<li class="toctree-l3"><a class="reference internal" href="modules.html#deformable">Deformable</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#mapping">Mapping</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#scripting">Scripting</a></li>
<li class="toctree-l3"><a class="reference internal" href="modules.html#draw-em">Draw-EM</a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="apidoc.html">Reference</a><ul>
<li class="toctree-l2"><a class="reference internal" href="apidoc/headers.html">Header Files</a></li>
<li class="toctree-l2"><a class="reference internal" href="apidoc/namespace.html">Namespace</a></li>
<li class="toctree-l2"><a class="reference internal" href="apidoc/classes.html">Classes</a></li>
</ul>
</li>
</ul>
</div>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="changelog.html">News</a><ul>
<li class="toctree-l2"><a class="reference internal" href="changelog.html#id1">2018</a><ul>
<li class="toctree-l3"><a class="reference internal" href="changelog.html#release-2-0-0-apr-8">Release 2.0.0 (Apr 8)</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="changelog.html#id2">2016</a><ul>
<li class="toctree-l3"><a class="reference internal" href="changelog.html#release-1-1-0-apr-21">Release 1.1.0 (Apr 21)</a></li>
<li class="toctree-l3"><a class="reference internal" href="changelog.html#release-1-0-0-jan-15">Release 1.0.0 (Jan 15)</a></li>
<li class="toctree-l3"><a class="reference internal" href="changelog.html#release-1-0rc2-jan-13">Release 1.0rc2 (Jan 13)</a></li>
<li class="toctree-l3"><a class="reference internal" href="changelog.html#release-1-0rc1-jan-10">Release 1.0rc1 (Jan 10)</a></li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="download.html">Download</a><ul>
<li class="toctree-l2"><a class="reference internal" href="download.html#source-code">Source Code</a></li>
<li class="toctree-l2"><a class="reference internal" href="download.html#system-requirements">System Requirements</a></li>
<li class="toctree-l2"><a class="reference internal" href="download.html#software-license">Software License</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="install.html">Installation</a><ul>
<li class="toctree-l2"><a class="reference internal" href="install.html#requirements">Requirements</a></li>
<li class="toctree-l2"><a class="reference internal" href="install.html#dependencies">Dependencies</a></li>
<li class="toctree-l2"><a class="reference internal" href="install.html#configuration">Configuration</a><ul>
<li class="toctree-l3"><a class="reference internal" href="install.html#cmake-gui-example">CMake GUI Example</a></li>
<li class="toctree-l3"><a class="reference internal" href="install.html#step-by-step">Step-by-step</a></li>
<li class="toctree-l3"><a class="reference internal" href="install.html#dependency-not-found">Dependency not found</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="install.html#build">Build</a></li>
<li class="toctree-l2"><a class="reference internal" href="install.html#installationsteps">Installation</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="help.html">Support</a></li>
<li class="toctree-l1"><a class="reference internal" href="publications.html">Publications</a><ul>
<li class="toctree-l2"><a class="reference internal" href="publications.html#registration">Registration</a></li>
<li class="toctree-l2"><a class="reference internal" href="publications.html#draw-em">Draw-EM</a></li>
<li class="toctree-l2"><a class="reference internal" href="publications.html#deformable">Deformable</a></li>
<li class="toctree-l2"><a class="reference internal" href="publications.html#point-set">Point Set</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="people.html">People</a><ul>
<li class="toctree-l2"><a class="reference internal" href="people.html#software-development">Software Development</a></li>
<li class="toctree-l2"><a class="reference internal" href="people.html#contributors">Contributors</a></li>
<li class="toctree-l2"><a class="reference internal" href="people.html#advisors">Advisors</a></li>
</ul>
</li>
</ul>
</div>
</div>
</div>
</div>
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<li class="right" style="margin-right: 10px">
<a href="index.html" title="Medical Image Registration ToolKit (MIRTK)"
>next</a></li>
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© Copyright 2013-2018 Imperial College London, Andreas Schuh.
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