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makefile
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# For installing and running PlanetProfile.
# USAGE:
# make: Print available command line arguments.
# make install: Copy necessary files for running PlanetProfile.
# make uninstall: Remove files outside the PlanetProfile directory that were placed by 'install'.
# make clean: Remove files ignored by GitHub (output data and figures).
#
# DESCRIPTION:
# Various commands for setting up and running PlanetProfile.
# Designed for accessibility for new users and ease of use for advanced users.
#
# AUTHOR: Marshall J. Styczinski (marshall.j.styczinski@jpl.nasa.gov), 2018-07-03
# Last updated 2023-04-27
SHELL := /bin/bash
# Set to 0 for PlanetProfile versions using Refprop
refprop=1
mbodies="Ariel" "Callisto" "Dione" "Enceladus" "Europa" "Ganymede" "Io" "Mimas" "Miranda" "Oberon" "Pluto" "Rhea" "Titan" "Titania" "Triton" "Umbriel" "PlanetProfile/Test"
comp="Comparison"
figs="figures"
inductfigs="induction"
inductdata="inductionData"
seisdata="seismicData"
cdpp=cd $(shell pwd)
foundmatlab=1
windows=1
# Check for likely install locations
ifeq ($(shell [ -d /Applications/MATLAB* ] ; echo $$?),0)
# Mac OS
matlabdir=/Applications/MATLAB*
foundmatlab=0
else ifeq ($(shell [ -d /mnt/c/Program\ Files/MATLAB* ] ; echo $$?),0)
# Windows
windows=0
matlabdir=/mnt/c/Program\ Files/MATLAB/*
driveltr=$(shell ppdir=$$(pwd) ; echo $${ppdir:5:1} | tr "[:lower:]" "[:upper:]")
rempath=$(shell ppdir=$$(pwd) ; echo $${ppdir:6})
cdpp=cd $(driveltr):$(rempath)
foundmatlab=0
else ifeq ($(shell [ -d /mnt/c/Program\ Files\ \(x86\)/MATLAB* ] ; echo $$?),0)
# Windows
windows=0
matlabdir=/mnt/c/Program\ Files\ \(x86\)/MATLAB/*
driveltr=$(shell ppdir=$$(pwd) ; echo $${ppdir:5:1} | tr "[:lower:]" "[:upper:]")
rempath=$(shell ppdir=$$(pwd) ; echo $${ppdir:6})
cdpp=cd $(driveltr):$(rempath)
foundmatlab=0
else ifeq ($(shell [ -d /usr/local/MATLAB/* ] ; echo $$?),0)
# Linux
matlabdir=/usr/local/MATLAB/*
foundmatlab=0
else ifeq ($(shell [ -d $$HOME/usr/local/MATLAB/* ] ; echo $$?),0)
# Linux
matlabdir=$$HOME/usr/local/MATLAB/*
foundmatlab=0
else
# Non-standard installation location. Make the user find the right spot.
foundmatlab=1
endif
matlabsupath=$(shell find $(matlabdir)/toolbox/local -maxdepth 0 -type d)
default:
@echo "Pass arguments to 'make' for one of the functions described below."
@echo "Your command line argument should look like: make command"
@echo
@echo "<no command>: Print this list."
@echo "install: Copy necessary files for running PlanetProfile"
@echo " and set default Matlab path."
@echo "uninstall: Remove files outside the PlanetProfile directory"
@echo " that were placed by 'install'."
@echo "clean: Remove files ignored by GitHub (output data and figures)."
@echo
clean:
@bodies=($(mbodies)) ; \
echo "Clearing data and figure files for:" $${bodies[@]} ; \
for body in $${bodies[@]} ; do \
if [ "$$body" = "PlanetProfile/Test" ] ; then \
bname="Test" ; \
else \
bname=$$body ; \
fi ; \
rm -f $$body/*.dat $$body/*.txt $$body/*.mat $$body/*.asv ; \
rm -f $$body/$(inductdata)/*.dat $$body/$(inductdata)/$(bname)*.mat $$body/$(inductdata)/*.asv ; \
rm -fd $$body/$(seisdata)/*.bm $$body/$(seisdata)/*/velmodel $$body/$(seisdata)/*/yannos.dat $$body/$(seisdata)/$(bname)* ; \
rm -f $$body/$(figs)/*.eps $$body/$(figs)/*.fig $$body/$(figs)/*.png $$body/$(figs)/*.pdf ; \
rm -f $$body/$(figs)/$(inductfigs)/*.eps $$body/$(figs)/$(inductfigs)/*.fig $$body/$(figs)/$(inductfigs)/*.png $$body/$(figs)/$(inductfigs)/*.pdf ; \
done ; \
rm -f $(comp)/*.eps $(comp)/*.fig $(comp)/*.png $(comp)/*.pdf $(comp)/*.txt ; \
rm -f $(comp)/$(inductfigs)/*.eps $(comp)/$(inductfigs)/*.fig $(comp)/$(inductfigs)/*.png $(comp)/$(inductfigs)/*.pdf
install:
# Copy Refprop files and libraries into system folders
ifeq ($(refprop),0)
mkdir -p /opt/refprop
cp Thermodynamics/librefprop.so-master/librefprop.dylib /opt/
mkdir -p /opt/refprop/fluids /opt/refprop/mixtures
cp Thermodynamics/librefprop.so-master/files/*.fld /opt/refprop/fluids/
cp Thermodynamics/librefprop.so-master/files/*.mix /opt/refprop/mixtures/
endif
@# Get list of PlanetProfile directories containing important files
@# and print them into a file named startup.m
@# First, check if SeaFreeze is installed and grab it if not
@SeaFinstalled=$$(find Thermodynamics/SeaFreeze/* | wc -l) ; \
if [[ $$SeaFinstalled -eq 2 ]] ; then \
echo "SeaFreeze has not been installed yet." ; \
read -p "Would you like to install it now using git? ([Y]/n)" doSeaFinstall ; \
if [[ "$$doSeaFinstall" =~ ^([nN][oO]|[nN])$$ ]] ; then \
SeaFinstalled=-1 ; \
else \
git clone git@github.com:Bjournaux/SeaFreeze.git Thermodynamics/SeaFreeze/SeaFreeze && SeaFinstalled=0 ; \
fi ; \
else \
SeaFinstalled=0 ; \
fi ; \
pathdirs=($$(find * -type d -not -path *version* -not -path *.git* -not -path *Python*)) ; \
echo "$(cdpp)" > startup.m ; \
for subdir in $${pathdirs[@]} ; do \
echo "addpath('$$subdir')" >> startup.m ; \
done ; \
echo "addpath(fullfile('$(shell pwd)/Utilities/mice/src/mice/'))" >> startup.m ; \
echo "addpath(fullfile('$(shell pwd)/Utilities/mice/lib/'))" >> startup.m ; \
if [[ $$SeaFinstalled -eq -1 ]] ; then \
echo "WARNING: SeaFreeze was not installed when the startup path" ; \
echo " file was created. Delete startup.m from the Matlab" ; \
echo " toolbox/local directory and run make install again after" ; \
echo " installing SeaFreeze in order to add it to the startup path." ; \
fi
ifeq ($(foundmatlab),1)
@echo "WARNING: Your Matlab install location was not found."
@echo "Copy the file named startup.m from the PlanetProfile"
@echo " directory to the Matlab toolbox/local directory"
@echo " to complete installation."
@echo
@echo "Next, in Matlab, go to:"
@echo " Preferences -> Matlab -> General -> Toolbox path caching"
@echo " and click on the button for Update Toolbox Path Cache."
@echo "Then, at the Matlab command prompt, run the startup command, or close and"
@echo " relaunch, to automatically add PlanetProfile dirs to your Matlab path."
else ifeq ($(windows),0)
@# Windows folders are most often not writable. Make the user do it.
@echo "To complete installation, copy startup.m from the PlanetProfile"
@echo " directory into your Matlab toolbox/local directory at:"
@echo " $(matlabsupath)"
@echo " "
@echo "Next, in Matlab, go to:"
@echo " Preferences -> Matlab -> General -> Toolbox path caching"
@echo " and click on the button for Update Toolbox Path Cache."
@echo "Then, at the Matlab command prompt, run the startup command, or close and"
@echo " relaunch, to automatically add PlanetProfile dirs to your Matlab path."
else
@echo "Matlab toolbox/local found: $(matlabsupath)"
@# Check if the Matlab startup file exists, and if so, if it's just for PlanetProfile
@# so we can avoid duplicates.
@if cmp -s startup.m "$(matlabsupath)"/startup.m ; then \
echo "Matlab startup file for PlanetProfile is already in place:" ; \
echo " $(matlabsupath)/startup.m" ; \
elif [ ! -f "$(matlabsupath)"/startup.m ] ; then \
cp startup.m "$(matlabsupath)"/startup.m ; \
echo "Attempted to create Matlab startup file with PlanetProfile dirs in path:" ; \
echo " $(matlabsupath)/startup.m" ; \
else \
cat startup.m >> "$(matlabsupath)"/startup.m ; \
echo "PlanetProfile dirs appended to Matlab path in startup file:" ; \
echo " $(matlabsupath)/startup.m" ; \
fi
@rm startup.m
@echo " "
@echo "Installation finished. If errors ocurred above or if startup.m is"
@echo " still in the PlanetProfile directory, paste into the Matlab"
@echo " toolbox/local/ dir."
@echo " "
@echo "Next, in Matlab, go to:"
@echo " Preferences -> Matlab -> General -> Toolbox path caching"
@echo " and click on the button for Update Toolbox Path Cache."
@echo "Then, at the Matlab command prompt, run the startup command, or close and"
@echo " relaunch, to automatically add PlanetProfile dirs to your Matlab path."
endif
uninstall:
# Delete Refprop files we may have placed
ifeq ($(refprop),0)
rm /opt/librefprop.dylib
rm /opt/refprop/fluids/*.fld
rm /opt/refprop/mixtures/*.mix
rmdir /opt/refprop/fluids /opt/refprop/mixtures
rmdir /opt/refprop
@echo "Refprop files removed."
endif
ifeq ($(foundmatlab),1)
@echo "WARNING: Your Matlab install location was not found."
@echo "Delete the PlanetProfile lines added to your Matlab"
@echo " startup file at MATLAB/toolbox/local/startup.m"
@echo " and delete this repository to complete uninstall."
else
@# Recreate startup.m file to check against the one Matlab is using
@pathdirs=($$(find * -type d -not -path *version* -not -path *input*)) ; \
echo "$(cdpp)" > startup.m ; \
for subdir in $${pathdirs[@]} ; do \
echo "addpath('$$subdir')" >> startup.m ; \
done
@# If the Matlab startup.m file matches the one we just made, it exists only
@# for PlanetProfile. Delete it to return the system to its initial state.
@# Otherwise, startup.m has been modified by the user, so we should not touch it.
@if cmp -s startup.m "$(matlabsupath)"/startup.m ; then \
rm "$(matlabsupath)"/startup.m ; \
echo "Attempted to remove Matlab startup.m." ; \
elif [ ! -f "$(matlabsupath)"/startup.m ] ; then \
echo "There was no Matlab startup file in $(matlabsupath)." ; \
echo "Was PlanetProfile installed before uninstalling?" ; \
else \
echo "$(matlabsupath)/startup.m contains more than just the PlanetProfile path." ; \
echo "Matlab startup.m not modified." ; \
fi
@# Get rid of our checking file
@rm startup.m
@echo
@echo "Uninstall complete, assuming no errors occurred above."
@echo "Delete this directory and all subdirectories to complete uninstall."
@echo
endif
pypi:
# Package files for PyPI (pip installation)
@# Delete contents of dist folder
@if [ -d dist ] ; then \
echo "Removing the contents of dist/ dir." ; \
rm -r dist ; \
fi
@# Ensure pip, setuptools, wheel, and twine are the latest versions
@pip install --upgrade pip
@pip install --upgrade setuptools wheel build twine
@# Build the distro based on info in setup.py and MANIFEST.in
@python -m build
@echo "Barring errors above, package build is complete."
@echo "Upload the .tar.gz file in dist/ as a new release on GitHub and run the following"
@echo "command to update the package in PyPI (authorized users only, use __token__):"
@echo "python -m twine upload dist/* --verbose"