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pyproject.toml
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pyproject.toml
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[tool]
[tool.poetry]
name = "bgcflow_wrapper"
version = "0.4.0"
documentation = "https://nbchub.github.io/bgcflow_wrapper"
repository = "https://github.com/NBChub/bgcflow_wrapper"
description = "A snakemake wrapper and utility tools command line interface for BGCFlow."
authors = ["Matin Nuhamunada <matinnu@biosustain.dtu.dk>"]
readme = "README.md"
license = "MIT"
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Natural Language :: English',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.11',
]
packages = [
{ include = "bgcflow", from = "src" },
{ include = "tests", format = "sdist" },
]
[tool.poetry.dependencies]
python = ">=3.11,<4.0"
black = ">=24.3.0"
isort = { version = "5.10.1", optional = true}
flake8 = { version = "4.0.1", optional = true}
flake8-docstrings = { version = "^1.6.0", optional = true }
pytest = ">=7.2.0"
pytest-cov = { version = "^3.0.0", optional = true}
virtualenv = { version = "^20.13.1", optional = true}
pip = { version = ">=22.0.3,<24.0.0", optional = true}
mkdocs = { version = "^1.2.3", optional = true}
mkdocs-include-markdown-plugin = { version = "^3.2.3", optional = true}
mkdocs-material = "^9.2.0b3"
mkdocstrings = { version = "^0.18.0", optional = true}
mkdocs-material-extensions = { version = "^1.0.3", optional = true}
twine = { version = "^3.8.0", optional = true}
mkdocs-autorefs = {version = "^0.3.1", optional = true}
pre-commit = {version = "^2.17.0", optional = true}
toml = {version = "^0.10.2", optional = true}
livereload = {version = "^2.6.3", optional = true}
pyreadline = {version = "^2.1", optional = true}
mike = { version="^1.1.2", optional=true}
click = "^8.1.3"
snakedeploy = "^0.8.2"
peppy = "^0.35.4"
panoptes-ui = "^0.2.0"
snakemake = "8.14.0"
mkdocs-jupyter = "^0.24.2"
mkdocs-macros-plugin = "^1.0.4"
setuptools = "^65.5.1"
sqlalchemy = "1.4.46"
tox = {version = "^4.6.4", optional = true}
gitpython = "^3.1.35"
dbt-metabase = "^0.9.15"
pulp = "2.7.0"
numpy = "^2.0.0"
pandas = "^2.2.2"
[tool.poetry.extras]
test = [
"pytest",
"black",
"isort",
"flake8",
"flake8-docstrings",
"pytest-cov",
"toml"
]
dev = ["tox", "pre-commit", "virtualenv", "pip", "twine", "toml"]
doc = [
"mkdocs",
"mkdocs-include-markdown-plugin",
"mkdocs-material",
"mkdocstrings",
"mkdocs-material-extension",
"mkdocs-autorefs",
"mike",
"setuptools"
]
[tool.poetry.scripts]
bgcflow = 'bgcflow.cli:main'
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.black]
line-length = 88
include = '\.pyi?$'
exclude = '''
/(
\.eggs
| \.git
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| _build
| buck-out
| build
| dist
)/
'''
[tool.isort]
profile = "black"