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option to flag or remove gene models with short exon (<10 nt) #31

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Juke34 opened this issue Jan 21, 2019 · 1 comment
Open

option to flag or remove gene models with short exon (<10 nt) #31

Juke34 opened this issue Jan 21, 2019 · 1 comment

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@Juke34
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Juke34 commented Jan 21, 2019

mRNA with Short introns (<10 bp) are not accepted for submission. Would be nice to catch those cases. It would be easy to find them looking at the list of coordinates from the mRNA features.
@Juke34
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Juke34 commented Apr 18, 2019 •
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As long as it is not implemented within EMBLmyGFF3, using the perl script agat_sp_flag_short_introns.pl from the AGAT repo does the job.

@schellt schellt mentioned this issue Jul 26, 2021
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