From 6e7a885d352c7f96696d23b6b2398563cde69c3a Mon Sep 17 00:00:00 2001 From: verku Date: Wed, 6 Nov 2024 10:30:02 +0100 Subject: [PATCH] Add missing rules with increased runtime to slurm configuration files --- config/slurm/profile/config_plugin_dardel.yaml | 4 ++++ config/slurm/profile/config_plugin_rackham.yaml | 4 ++++ 2 files changed, 8 insertions(+) diff --git a/config/slurm/profile/config_plugin_dardel.yaml b/config/slurm/profile/config_plugin_dardel.yaml index 4a1dcfc..a820e43 100644 --- a/config/slurm/profile/config_plugin_dardel.yaml +++ b/config/slurm/profile/config_plugin_dardel.yaml @@ -351,6 +351,10 @@ set-resources: runtime: 300 mem_mb: 16000 cpus_per_task: 16 + build_snpEff_db: + runtime: 300 + annotate_vcf: + runtime: 300 outgroup_fastqc: runtime: 16 mem_mb: 16000 diff --git a/config/slurm/profile/config_plugin_rackham.yaml b/config/slurm/profile/config_plugin_rackham.yaml index 2fae685..e261f79 100644 --- a/config/slurm/profile/config_plugin_rackham.yaml +++ b/config/slurm/profile/config_plugin_rackham.yaml @@ -337,6 +337,10 @@ set-resources: runtime: 300 mem_mb: 12800 cpus_per_task: 2 + build_snpEff_db: + runtime: 300 + annotate_vcf: + runtime: 300 outgroup_fastqc: runtime: 1440 mem_mb: 12800