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Setup

Software

For this lesson you will need R and RStudio Desktop.

  • Download R from the R project website and follow the instructions there to install the software.

  • Download RStudio Desktop IDE from the RStudio website and follow the instructions there to install the software.

  • From within RStudio, install the Tidyverse collection of R packages. {: .prereq}

Data

The following files are used in this lesson:

The data is taken from the following study:

Simonetti, M., Zhang, N., Harbers, L. et al. COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance. Nat Commun 12, 3903 (2021). https://doi.org/10.1038/s41467-021-24078-9 {: .prereq}

{% include links.md %}