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RandomCLIP_V2.sh
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RandomCLIP_V2.sh
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#swarm -f Random_exon_V2.sh --verbose 1 -g 50 -t 32 -b 2 --time 4:00:00 --job-name RandomV2 --module bedtools,R/3.5,viennarna
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random1/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 1 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random2/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 2 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random3/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 3 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random4/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 4 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random5/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 5 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random6/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 6 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random7/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 7 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random8/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 8 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random9/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 9 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random10/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 10 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random11/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 11 Exons Transcriptomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random12/Exons/all/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 12 Exons Transcriptomic all
### Genomic Intron
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random1/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 1 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random2/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 2 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random3/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 3 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random4/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 4 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random5/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 5 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random6/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 6 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random7/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 7 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random8/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 8 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random9/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 9 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random10/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 10 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random11/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 11 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random12/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random13/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random14/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random15/Introns/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all
### Genomic Exon
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random1/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 1 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random2/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 2 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random3/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 3 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random4/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 4 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random5/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 5 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random6/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 6 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random7/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 7 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random8/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 8 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random9/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 9 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random10/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 10 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random11/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 11 Exons Genomic all
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random12/Exons/all/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 12 Exons Genomic all
#### Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random1/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 1 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random2/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 2 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random3/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 3 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random4/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 4 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random5/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 5 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random6/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 6 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random7/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 7 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random8/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 8 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random9/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 9 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random10/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 10 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random11/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 11 Exons Transcriptomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random12/Exons/3UTR/Transcriptomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 12 Exons Transcriptomic 3UTR
### Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random1/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 1 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random2/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 2 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random3/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 3 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random4/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 4 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random5/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 5 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random6/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 6 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random7/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 7 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random8/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 8 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random9/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 9 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random10/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 10 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random11/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 11 Exons Genomic 3UTR
cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random12/Exons/3UTR/Genomic
Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 100 .2 .9 138 16 12 Exons Genomic 3UTR
### Genomic Intron
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random1/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 1 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random2/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 2 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random3/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 3 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random4/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 4 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random5/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 5 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random6/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 6 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random7/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 7 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random8/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 8 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random9/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 9 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random10/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 10 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random11/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 11 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random12/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random13/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random14/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all
#cd /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/Random15/Introns/all/Genomic
#Rscript /data/RBL_NCI/Wolin/Phil/mESC_clip/structure/RandomExon_chunk_V2.R 100 75 .2 .9 421 16 12 Introns Genomic all