You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
This repository has been archived by the owner on Oct 19, 2024. It is now read-only.
However, during validation, we are dealing with ROIs, and the resulting coordinates may be at an arbitrary place in the WSI. This results in a misaligned grid and patches from a subsequent ROI on the same WSI may fall outside the created grid, resulting in errors here
Describe the bug
During validation H5 writing, the writer is initialized with the first batch, and a grid is made here:
ahcore/ahcore/writers.py
Line 120 in 25cfc2c
ahcore/ahcore/writers.py
Line 245 in 25cfc2c
To Reproduce
A train + validation run with the h5 writing enabled.
Expected behavior
It should write a h5 (slightly) around all ROIs. The correct Grid is already available in the validation dataset.
The text was updated successfully, but these errors were encountered: