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mapping.html
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<!doctype html>
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<title>Content Mapping</title>
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<div class="header-container">
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<div class="title">
<img id="nih" src="img/NIHBD2K.jpg"/>
<img id="ohsu" src="img/OHSUlogo.jpg">
<div class="words">
<h1>OHSU Big Data to Knowledge (BD2K)</h1>
<h2>Open Educational Resources (OERs) Project</h2>
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<ul>
<li><a href="index.html">Home</a></li>
<li><a href="topics.html">Modules</a></li>
<li><a href="cases.html">Cases</a></li>
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<article id="mapping">
<section class="section_header">
This website and the modules housed on this domain are now in an archival state. For more active, community-based development, the OERs have moved to a <a href='https://github.com/OHSUBD2K/' target='_BLANK'>github repository</a> <img src="img/github.png" alt="github octocat silhouette"/>.
</section>
<header>
<h1>Clinical and Translational Science Awards (CTSA) program</h1>
<p>The CTSA program provides a list of ten competency areas within biomedical informatics for their grant awardees.</p>
</header>
<section class="ready">
<div class="listoftopics">
<ul>
<!--<li>
<div class="topicID">
<p>Competency #1</p>
<p>Describe and make use of best practices for managing, protecting and analyzing biomedical and health information in Clinical and Translational Research</p>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="BDK03.html">BDK03 - Ethical Issues in Use of Big Data</a></li>
<li><a href="BDK14.html">BDK14 - Data annotation and curation</a></li>
<li><a href="BDK30.html">BDK30 - Regulatory Issues in Big Data for Genomics and Health</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>-->
<li>
<div class="topicID">
<p>Competency #1</p>
<p>Utilize informatics-based tools in translational research including:</p>
<ul>
<li>a. Locate relevant informatics tools;</li>
<li>b. Select appropriate informatics tools;</li>
<li>c. Use those tools in research for managing and analyzing biomedical and health information</li>
</ul>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK10-Information-Retrieval">BDK10 - Information Retrieval</a></li>
<li>BDK13 - Data and tools landscape</li>
<li>BDK28 - Translating the Question</li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #2</p>
<p>Describe the essential functions of the major clinical systems (eg, the EHR and its feeder systems, such as radiology and lab) that are relevant to CTS and the challenges to using these data for research</p>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK08-Secondary-Use-Re-Use-of-Clinical-Data">BDK08 - Secondary Use (Reuse) of Clinical Data</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #3</p>
<p>Describe the essential functions of major research computer systems (eg, clinical trials management systems, biospecimen management systems, research grant and finance management systems, and research services tracking systems) that are relevant to clinical and translational science (CTS)</p>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li>BDK13 - Data and tools landscape</li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #4</p>
<p>Compare and contrast the organizational roles and principal responsibilities essential for access, management, and governance of data related to clinical and translational science (CTS)</p>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK07-Team-Science">BDK07 - Team Science</a></li>
<li><a href="https://github.com/OHSUBD2K/BDK09-Publication-and-Peer-Review">BDK09 - Publication And Peer Review</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #5</p>
<p>Explain the role that health information technology standards have on the interoperability of research, clinical, and administrative information systems and on secondary use of data for clinical and translational science (CTS)</p>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="BDK04.html">BDK04 - Clinical Data Standards Related to Big Data</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #6</p>
<p>Identify, retrieve, and manage biomedical and health science knowledge through literature searches using advanced search techniques (PubMed, Google Scholar, MeSH etc.)</p>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK10-Information-Retrieval">BDK10 - Information Retrieval</a></li>
<li><a href="https://github.com/OHSUBD2K/BDK15-Metadata-perspectives-from-the-web-and-databases-systems">BDK15 - Data Metadata and Provenance</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #7</p>
<p>Describe the essential information management, analysis, transformation, summarization, and visualization methods that apply to clinical and translational science (CTS) data, such as:</p>
<ul>
<li>a. Genomic, proteomic and other omic data</li>
<li>b. Clinical data</li>
<li>c. Imaging data</li>
<li>d. Consumer and patient-reported data</li>
<li>e. Population level data and environmental exposure data</li>
</ul>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK06-Public-Health-and-Big-Data">BDK06 - Public Health and Big Data</a> (for a. and b.)</li>
<li><a href="https://github.com/OHSUBD2K/BDK18-Data-Visualization">BDK18 - Visualization and Interpretation</a> (for visualization methods and considerations)</li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #8</p>
<p>Illustrate the nature of the contributions in consulting and/or collaborating with biomedical and health informatics throughout the life cycle of individual clinical and translational research projects:</p>
<ul>
<li>a. Use the terminology and principles of biomedical informatics to interact effectively with informaticians;</li>
<li>b. Discriminate among the different subdomains of biomedical informatics in order to identify the appropriate informatics consultant or collaborator;</li>
<li>c. Enumerate the roles of biomedical informatics specialists in the design, development, and implementation of translational research projects</li>
</ul>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://dmice.ohsu.edu/hersh/whatis/" target="_BLANK" class="outside">Outside Resource</a> (for a. and b.)</li>
<li><a href="https://github.com/OHSUBD2K/BDK01-Biomedical-Big-Data-Science">BDK01 - Biomedical Big Data Science</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #9</p>
<p>Discuss the fundamental principles and practices that address the ethical, legal, privacy, social, and security implications of biomedical and health informatics</p>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK03-Ethical-Issues-in-Use-of-Big-Data">BDK03 - Ethical Issues in Use of Big Data</a></li>
<li><a href="https://github.com/OHSUBD2K/BDK20-Regulatory-Issues-in-Big-Data-for-Genomics-and-Health">BDK20 - Regulatory Issues in Big Data for Genomics and Health</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #10</p>
<p>Identify how structure and organization of information in a domain can impact researchers' translational research foci through:</p>
<ul>
<li>a. Fundamental data categories and elements</li>
<li>b. Terminologies and taxonomies</li>
<li>c. Ontologies</li>
</ul>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK16-Semantic-Data-Interoperability">BDK16 - Semantic data Interoperability</a></li>
<li><a href="https://github.com/OHSUBD2K/BDK14-Ontologies-101">BDK14 - Ontologies 101</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
<li>
<div class="topicID">
<p>Competency #11</p>
<p>Describe and make use of best practices for developing research instruments and protocols and for communicating results of research that are appropriate to specific audiences and special populations, addressing:</p>
<ul>
<li>a. Literacy and numeracy;</li>
<li>b. Cultural attitudes; and</li>
<li>c. Special terminologies.</li>
</ul>
</div>
<div class="topicDescription">
<p>Learning Content Recommendations:</p>
<ul>
<li><a href="https://github.com/OHSUBD2K/BDK07-Team-Science">BDK07 - Team Science</a></li>
<li>BDK28 - Translating the Question</li>
<li><a href="https://github.com/OHSUBD2K/BDK21-Developing-Data-Workshops">BDK21 - Hosting data dissemination and data stewardship workshops</a></li>
</ul>
</div>
<div class="seClear"></div>
</li>
</ul>
</div>
</section>
</article>
<aside>
<h3>Feedback</h3>
<p>Your feedback is welcome!</p>
<p>The modules and this site are in the development phase and we value your feedback to help improve these educational materials.</p>
<a href="https://www.surveymonkey.com/r/BD2K-OER-Feedback" target="_BLANK">Module Feedback and Evaluation Form</a><br/><p>Website Feedback Form:</p><a href="http://goo.gl/forms/dEXEtX3zAB" target="_BLANK">Feedback Form</a>
</aside>
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<h3>Funding</h3>
<p>These materials are supported by the National Institute of General Medical Sciences, funded by the NIH Big Data to Knowledge Initiative, under Award Number <a href="http://projectreporter.nih.gov/project_info_description.cfm?aid=8828784&icde=22004384" target="_BLANK">1R25GM114820</a>.</p>
</div>
<div class="footer-right">
<h3>Contact Us</h3>
<p><a href="http://goo.gl/forms/kBdoFsLXeW" target="_BLANK">Contact Form</a></p>
<ul>
<li>BD2K OHSU Open Educational Resources Project</li>
<li>Oregon Health & Science University</li>
<li>Mail Code: BICC</li>
<li>3181 S.W. Sam Jackson Park Rd.</li>
<li>Portland, OR 97239-3098</li>
</ul>
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