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requirements.txt
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requirements.txt
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#
# This file is autogenerated by pip-compile with Python 3.9
# by the following command:
#
# pip-compile
#
adjusttext==0.8
# via JAMIE (setup.py)
anndata==0.9.1
# via
# JAMIE (setup.py)
# scanpy
brokenaxes==0.5.0
# via JAMIE (setup.py)
certifi==2023.5.7
# via requests
charset-normalizer==3.2.0
# via requests
colorama==0.4.6
# via tqdm
contourpy==1.1.0
# via matplotlib
cycler==0.11.0
# via matplotlib
filelock==3.12.2
# via torch
fonttools==4.41.0
# via matplotlib
h5py==3.9.0
# via
# anndata
# scanpy
idna==3.4
# via requests
importlib-resources==6.0.0
# via matplotlib
jinja2==3.1.2
# via torch
joblib==1.3.1
# via
# pynndescent
# scanpy
# scikit-learn
kiwisolver==1.4.4
# via matplotlib
llvmlite==0.40.1
# via
# numba
# pynndescent
markupsafe==2.1.3
# via jinja2
matplotlib==3.7.2
# via
# JAMIE (setup.py)
# adjusttext
# brokenaxes
# scanpy
# seaborn
mpmath==1.3.0
# via sympy
natsort==8.4.0
# via
# anndata
# scanpy
networkx==3.1
# via
# scanpy
# torch
numba==0.57.1
# via
# pynndescent
# scanpy
# umap-learn
numpy==1.24.4
# via
# JAMIE (setup.py)
# adjusttext
# anndata
# contourpy
# h5py
# matplotlib
# numba
# pandas
# patsy
# scanpy
# scikit-learn
# scikit-learn-extra
# scipy
# seaborn
# statsmodels
# torchvision
# umap-learn
packaging==23.1
# via
# anndata
# matplotlib
# scanpy
# statsmodels
pandas==2.0.3
# via
# JAMIE (setup.py)
# anndata
# scanpy
# seaborn
# statsmodels
patsy==0.5.3
# via
# scanpy
# statsmodels
pillow==10.0.0
# via
# matplotlib
# torchvision
pynndescent==0.5.8
# via
# JAMIE (setup.py)
# umap-learn
pyparsing==3.0.9
# via matplotlib
python-dateutil==2.8.2
# via
# matplotlib
# pandas
pytz==2023.3
# via pandas
requests==2.31.0
# via torchvision
scanpy==1.9.3
# via JAMIE (setup.py)
scikit-learn==1.3.0
# via
# JAMIE (setup.py)
# pynndescent
# scanpy
# scikit-learn-extra
# umap-learn
scikit-learn-extra==0.3.0
# via JAMIE (setup.py)
scipy==1.11.1
# via
# JAMIE (setup.py)
# anndata
# pynndescent
# scanpy
# scikit-learn
# scikit-learn-extra
# statsmodels
# umap-learn
seaborn==0.12.2
# via
# JAMIE (setup.py)
# scanpy
session-info==1.0.0
# via scanpy
six==1.16.0
# via
# patsy
# python-dateutil
statsmodels==0.14.0
# via scanpy
stdlib-list==0.9.0
# via session-info
sympy==1.12
# via torch
threadpoolctl==3.2.0
# via scikit-learn
torch==2.0.1
# via
# JAMIE (setup.py)
# torchvision
torchvision==0.15.2
# via JAMIE (setup.py)
tqdm==4.65.0
# via
# scanpy
# umap-learn
typing-extensions==4.7.1
# via torch
tzdata==2023.3
# via pandas
umap-learn==0.5.3
# via
# JAMIE (setup.py)
# scanpy
unioncom==0.4.0
# via JAMIE (setup.py)
urllib3==2.0.4
# via requests
zipp==3.16.2
# via importlib-resources