Singularity.def

Bootstrap: docker
From: condaforge/mambaforge
Stage: build

%files
script.sh /scripts
%labels
MAINTAINER Reimar Bauer <rb.proj@gmail.com>
%post
##################################################################################
# Definition File for singualarity
#
# Based on mambaforge Image
# xhost +
# singularity build -f mss.sif Singularity.def
# singularity shell mss.sif
#
# Singularity > mss # starts the ui
# Singularity > mswms_demodata --seed  # creates in your $HOME a mss/ folder with testdata
# Singularity > export PYTHONPATH=$HOME/mss; mswms # starts the development server 
# Singularity > mscolab db --init; mscolab start # starts the mscolab server
#
##################################################################################



# get keyboard working for mss gui
apt-get --yes update && DEBIAN_FRONTEND=noninteractive \
apt-get --yes install xserver-xorg-video-dummy \
&& apt-get --yes upgrade \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*

# Update base
# this is needed to be able to install mss versions > 1.2.1
conda config --add channels defaults &&\
conda update -n base -c defaults conda

# create some desktop user directories
# if there is no data attached e.g. demodata /srv/mss is the preferred dir
mkdir -p /root/.local/share/applications/ \
&& mkdir -p /root/.local/share/icons/hicolor/48x48/apps/ \
&& mkdir /srv/mss

# Install Mission Support System Software
# xorg-libxrender installs X11 packages needed by QT
mamba create -n mssenv mss xorg-libxrender -y
PATH=/opt/conda/envs/mssenv/bin:$PATH