setup.py

#!/usr/bin/env python
import sys
import os

# setup.py largely based on
#   http://hynek.me/articles/sharing-your-labor-of-love-pypi-quick-and-dirty/
# Also see Jeet Sukumaran's DendroPy

###############################################################################
# setuptools/distutils/etc. import and configuration
try:
    import ez_setup

    try:
        ez_setup_path = " ('" + os.path.abspath(ez_setup.__file__) + "')"
    except OSError:
        ez_setup_path = ""
    sys.stderr.write("using ez_setup%s\n" % ez_setup_path)
    ez_setup.use_setuptools()
    import setuptools

    try:
        setuptools_path = " ('" + os.path.abspath(setuptools.__file__) + "')"
    except OSError:
        setuptools_path = ""
    sys.stderr.write("using setuptools%s\n" % setuptools_path)
    from setuptools import setup, find_packages
except ImportError as e:
    sys.stderr.write("using distutils\n")
    from distutils.core import setup

    sys.stderr.write("using canned package list\n")
    PACKAGES = ['peyotl',
                'peyotl.api',
                'peyotl.nexson_syntax',
                'peyotl.nexson_validation',
                'peyotl.ott',
                'peyotl.phylesystem',
                'peyotl.string',
                'peyotl.sugar',
                'peyotl.test',
                'peyotl.test.support',
                'peyotl.utility',
                ]
    EXTRA_KWARGS = {}
else:
    sys.stderr.write("searching for packages\n")
    PACKAGES = find_packages()
    EXTRA_KWARGS = dict(
        include_package_data=True,
        test_suite="peyotl.test"
    )

EXTRA_KWARGS["zip_safe"] = False
ENTRY_POINTS = {}
EXTRA_KWARGS['scripts'] = ['scripts/nexson/validate_ot_nexson.py',
                           'scripts/nexson/nexson_newick.py',
                           'scripts/nexson/nexson_nexml.py',
                           'scripts/phylesystem/ot_phylesystem_list_property_values.py',
                           'scripts/phylesystem/ot_phylesystem_list_study_filepaths.py',
                           'scripts/phylesystem/ot_phylesystem_list_otu_edited_labels.py',
                           'scripts/ot_taxon_report',
                           'scripts/clipeyotl.py',
                           ]

###############################################################################
# setuptools/distuils command extensions
try:
    from setuptools import Command
except ImportError:
    sys.stderr.write("setuptools.Command could not be imported: setuptools extensions not available\n")
else:
    sys.stderr.write("setuptools command extensions are available\n")
    command_hook = "distutils.commands"
    ENTRY_POINTS[command_hook] = []

    ###########################################################################
    # coverage
    ###########################################################################
    # coverage
    try:
        from peyotl.test.support import coverage_analysis

        if coverage_analysis.PEYOTL_COVERAGE_ANALYSIS_AVAILABLE:
            sys.stderr.write("coverage analysis available ('python setup.py coverage')\n")
            ENTRY_POINTS[command_hook].append("coverage = peyotl.test.support.coverage_analysis:CoverageAnalysis")
        else:
            assert False
    except:
        sys.stderr.write("coverage analysis not available\n")

setup(
    name='peyotl',
    version='0.1.4dev',  # sync with __version__ in peyotl/__init__.py
    description='Library for interacting with Open Tree of Life resources',
    long_description=(open('README.rst').read()),
    url='https://github.com/OpenTreeOfLife/peyotl',
    license='BSD',
    author='Emily Jane B. McTavish and Mark T. Holder',
    py_modules=['peyotl'],
    install_requires=['setuptools',
                      'anyjson',
                      'coverage',
                      'sh>=1.08',
                      'locket>=0.1.1',
                      'requests>=2.2.1',
                      'redis',
                      'enum34==1.1.10; python_version < "3.4"',
                      'argcomplete',
                      'python-dateutil', ],
    packages=PACKAGES,
    entry_points=ENTRY_POINTS,
    classifiers=[
        'Development Status :: 4 - Beta',
        'Intended Audience :: Science/Research',
        'Intended Audience :: Developers',
        'Natural Language :: English',
        'License :: OSI Approved :: BSD License',
        'Operating System :: OS Independent',
        'Programming Language :: Python :: 2.7',
        'Programming Language :: Python :: 3.4',
        'Programming Language :: Python :: 3.3',
        'Topic :: Scientific/Engineering :: Bio-Informatics',
    ],
    **EXTRA_KWARGS
)