Supply bam or use single end reads?

[liscruk]

Hello,

I am trying to run Clinker on JAFFAL output generated from Nanopore long-reads. Hence I do not want or have paired-end reads as input for STAR alignment. Is there a way of supply a bam directly or use the JAFFAL output ?

Thans

[breons]

Hi,

Sorry for the late reply!

Unfortunately, not as of yet. Though it is being discussed I think it would be quite a while until this feature is added and anything that I could recommend would be a bit hacky! Let me know if that is of interest.

Cheers,
Breon.

[haowBio]

Hi,

I have the same requirement，have you solved it ?

Thanks