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custom database #26

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Zhuxitong opened this issue Oct 31, 2022 · 0 comments
Open

custom database #26

Zhuxitong opened this issue Oct 31, 2022 · 0 comments

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@Zhuxitong
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Hi, @breons !

I am now trying Clinker on my custom specie. I first used Lace to get superTranscripts fasta and corresponding gff files. But I noted the header in the fasta generated by Lace is not identical to the one under resource.

The one generated by Lace:

>geneID NoTrans:2,Whirls:0

The one under resource directory (hg38_genCode24_st.fasta):

>ZNF329 segs:1-36,37-130,131-238,239-673,674-3933

I wonder if there is a way to create my own st_fasta file similar to the one under resource, so I could run clinker with my own specie?

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